Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a09r
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 499 NTVKTLVASHVTNVALVANKHH 564
           N +  +VAS V +  L+ N HH
Sbjct: 299 NCIMFMVASSVVSTILILNYHH 320


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 499 NTVKTLVASHVTNVALVANKHH 564
           N +  +VAS V    LV N HH
Sbjct: 330 NCIMFMVASSVVLTVLVLNFHH 351


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 499 NTVKTLVASHVTNVALVANKHH 564
           N +  +VAS V    LV N HH
Sbjct: 330 NCIMFMVASSVVLTVLVLNFHH 351


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 41  ESMHFIGQNKIFKNHYI 91
           E  HF+G NK  K+ Y+
Sbjct: 360 ELPHFVGSNKPVKDEYM 376


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/40 (25%), Positives = 16/40 (40%)
 Frame = +3

Query: 498 KYRQNACRESRDQCSFGRKQTPHVXXXXXXXXXXXXXHKY 617
           KYR+ +   SRD+    R + P +             +KY
Sbjct: 57  KYRETSKERSRDRAERERSREPKIISSLSNNTIHNNNYKY 96


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 548 SQTNTTCDVTKRGGIDRHPTTQILNRV 628
           + T+ T + T+   +DR P TQ L RV
Sbjct: 332 TDTDGTKERTEEVALDRTPVTQGLLRV 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,483
Number of Sequences: 438
Number of extensions: 4224
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)