Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a09f
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 151 6e-38
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 121 9e-29
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 33 0.031
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 28 0.87
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 28 1.2
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 28 1.2
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.0
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 26 3.5
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 3.5
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 26 4.7
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 25 6.2
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 25 6.2
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 151 bits (367), Expect = 6e-38
Identities = 69/125 (55%), Positives = 92/125 (73%), Gaps = 1/125 (0%)
Frame = +1
Query: 211 KNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADLTYNVMAFTEIMQMIWKRLNDHGKN 390
KN + Y+D Q+KVR AT+ND WGPS T MAEIA+LTY+ E+M +I +RLND GKN
Sbjct: 13 KNFSKGYTDTQIKVRNATTNDSWGPSGTAMAEIAELTYDQNEMLEVMDIIDRRLNDKGKN 72
Query: 391 WRHVYKALVLMEYLIKTGSEKVAMQCKENIYAIQTLKDFQYMEE-GKDQGLNVREKAKQL 567
WRHV+K+L L+EY + GSE V K+NIY I TL++F Y+++ G DQG NVR KAK++
Sbjct: 73 WRHVFKSLSLLEYCLHNGSENVVRWAKDNIYIITTLREFVYVDDNGHDQGQNVRTKAKEI 132
Query: 568 ANLLK 582
+LL+
Sbjct: 133 TSLLE 137
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 121 bits (291), Expect = 9e-29
Identities = 57/128 (44%), Positives = 86/128 (67%), Gaps = 2/128 (1%)
Frame = +1
Query: 202 RNIKNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADLTYNVMAFTEIMQMIWKRLNDH 381
R +N+ NY+ + +VREAT+N+PWG S++LM EIA T+N EI+ MI++R +
Sbjct: 21 RKAQNVVMNYTSMEARVREATNNEPWGASTSLMMEIAQGTHNYSQLNEILPMIYRRFTEK 80
Query: 382 -GKNWRHVYKALVLMEYLIKTGSEKVAMQCKENIYAIQTLKDFQYME-EGKDQGLNVREK 555
+ WR +YKAL L+E+L+K GSE+V + + I+ L++F Y++ KDQGLNVR +
Sbjct: 81 TAEEWRQIYKALQLLEFLVKNGSERVVDDARAHQATIKMLRNFHYIDHRQKDQGLNVRTR 140
Query: 556 AKQLANLL 579
AK+L LL
Sbjct: 141 AKELVELL 148
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 33.1 bits (72), Expect = 0.031
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +3
Query: 150 QDAPGPGRDASERSRPQKEYKEPRTQLFRCSG-----QSSRGDFKRPM-GSVQHAHGGDR 311
+DA PGRD R P+ EY+ +R G ++SR D++RP + G +
Sbjct: 207 RDAYRPGRDDERRYAPRGEYRRNNRDEYRRGGRDEYRRNSRSDYRRPHDDEYRRPRGDEY 266
Query: 312 RP 317
RP
Sbjct: 267 RP 268
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 28.3 bits (60), Expect = 0.87
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +1
Query: 316 LTYNVMAFTEIMQMIWKRLNDHGK-NW----RHVYK 408
+T N+ T + Q WKR+N K NW +H YK
Sbjct: 218 VTSNIQRLTSLYQTRWKRINSEEKRNWEEWIKHKYK 253
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +1
Query: 346 IMQMIWKRLNDHGKNWRHVYKALVLMEYLIKTGSEKVA-MQCKENIYAIQTLKDFQYMEE 522
++Q + +RL + ++W V+K L++ ++K G+ + + ++ LK + +
Sbjct: 47 VIQALCERLKE--QSWTIVFKTLIVFHVMLKEGAPNTTIVALSQRPRILEVLKASSLLAQ 104
Query: 523 GK---DQGLNVREKAKQLANL 576
GK + + E+AKQ L
Sbjct: 105 GKNIYNYSRFLSERAKQYGRL 125
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Frame = +1
Query: 184 NVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADLTYNVMAFTEIMQMIW 363
N+ + NI + N K + +N P +L +E +++ EI ++
Sbjct: 74 NMDAISANINSKLENRLKVLEKAISSITNSPIAGQISLKSEKDVFLQGLLSMDEIELLLE 133
Query: 364 KRLNDHGKNWRHV-YKALVLMEYLIKTGSEKVAMQC 468
+ +GK W V Y A ME L +A C
Sbjct: 134 IFIERYGKRWLSVDYSASQYMELLYTKSHLMLATAC 169
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 211 KNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADLTYNVMAFT 342
K L+H + ++ ++++DP+G SST ++ + N + T
Sbjct: 22 KKLSHRFKSVEIVPPSSSNDDPFGFSSTKGIRLSSINSNDLVNT 65
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 141 SDFQDAPGPGRDASERSRPQKE 206
S Q PGPG + RP+KE
Sbjct: 2 SSLQKRPGPGNSSQPTERPRKE 23
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 249 SSRGDFKRPMGSVQHAHGGDRRPHVQRHG 335
S+ GDF++ GS H HG V +G
Sbjct: 294 SAAGDFRQAKGSASHPHGSGSSNGVAPNG 322
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 389 FLPWSFKRFHIICMI 345
FLPW +FHI C+I
Sbjct: 58 FLPWRKAKFHIPCVI 72
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 216 VLYIPSEACYVHLHL-VPGPGHLENRFNDTITKTKSHRKTFTS 91
V+ P E H V GP H+ F +TK K+ + FTS
Sbjct: 99 VMEAPEEVWNAHYQTNVLGPIHVFKAFYPLLTKKKTRQVIFTS 141
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 185 FTCISSRARGILKIASTTRSQKQNHIEKHSLPLK 84
F+ +S+ G+ K + S NH E +S+PL+
Sbjct: 375 FSAATSKKSGLTKKTNIPYSPNSNHEEINSIPLR 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,372
Number of Sequences: 5004
Number of extensions: 49035
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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