Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a09f
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 136 2e-32
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 103 1e-22
04_04_1036 + 30305548-30305588,30305710-30305761,30306408-303064... 72 3e-13
08_02_1633 + 28392378-28393445 65 3e-11
01_06_1296 + 36088467-36088582,36088697-36088819,36088938-36089607 56 2e-08
04_03_0690 + 18751601-18753667 33 0.17
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 33 0.22
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 33 0.22
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 32 0.39
08_02_1362 + 26406710-26408530 30 1.6
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718... 29 2.7
03_05_0871 + 28396964-28399843 29 2.7
07_01_0978 + 8262778-8262859,8262931-8263505 28 4.8
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 28 4.8
05_03_0323 - 12424243-12424776 24 6.1
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697... 28 6.3
04_04_0924 - 29449285-29449290,29449386-29449575,29449669-294497... 28 6.3
02_03_0357 + 18075171-18077240 28 6.3
01_06_1411 + 37127098-37128279 28 6.3
08_01_0191 + 1590948-1591607,1591694-1592176,1592449-1592451,159... 27 8.3
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 27 8.3
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 136 bits (328), Expect = 2e-32
Identities = 59/132 (44%), Positives = 88/132 (66%), Gaps = 1/132 (0%)
Frame = +1
Query: 187 VAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADLTYNVMAFTEIMQMIWK 366
V L+R + + K+ +ATSN+PWGP +L+AEIA T N + +M ++WK
Sbjct: 9 VRDLKREVNKKVLKVPGIEQKILDATSNEPWGPHGSLLAEIAQATQNYHEYQMVMNVVWK 68
Query: 367 RLNDHGKNWRHVYKALVLMEYLIKTGSEKVAMQCKENIYAIQTLKDFQYME-EGKDQGLN 543
R+ND GKNWRHVYK L++++YL+ G+E+V +E+ Y I TL DFQY++ G+DQG N
Sbjct: 69 RINDTGKNWRHVYKGLIVLDYLVAHGTERVIDDIREHSYQISTLADFQYIDSSGRDQGSN 128
Query: 544 VREKAKQLANLL 579
VR K++ L +L+
Sbjct: 129 VRRKSQSLVSLV 140
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 103 bits (247), Expect = 1e-22
Identities = 54/139 (38%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Frame = +1
Query: 166 RDEMQVNVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADLTYNVMAFTE 345
R + V +RR + + + KV +ATS++PWGP + +A+IA T +
Sbjct: 4 RKVLDQTVREIRREVNLKVLKVPEIEQKVLDATSDEPWGPHGSDLADIARATKSYGDSEI 63
Query: 346 IMQMIWKRLNDHGKNWRHVYKALVLMEYLIKTGSEKVAMQCKENIYAIQTLKDFQYME-E 522
IM ++W+RL + NWRHVYKAL ++EYL+ G+E+ A +N I L F+Y+E
Sbjct: 64 IMNVLWQRLGNTLANWRHVYKALAVIEYLLANGTERAADGIVDNSSRIAKLTRFEYLEPN 123
Query: 523 GKDQGLNVREKAKQLANLL 579
GKD GLNVR+KA+ + +L
Sbjct: 124 GKDVGLNVRKKAEAVLAIL 142
>04_04_1036 +
30305548-30305588,30305710-30305761,30306408-30306487,
30307035-30307110,30307169-30307252,30307356-30307501,
30307608-30307826,30308180-30308271,30308677-30308867,
30309100-30309706,30309811-30310004
Length = 593
Score = 72.1 bits (169), Expect = 3e-13
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Frame = +1
Query: 187 VAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADLTYNVMAFTEIMQMIWK 366
V ++R + + + KV +ATS++PWGP T ++E++ T I
Sbjct: 11 VREIKREVNLKVLKVPELEQKVLDATSDEPWGPHGTTLSELSHATKKFTGALYYEFYIGH 70
Query: 367 RLNDHGKNWRHVYKALVLMEYLIKTGSEKVAMQCKENIYAIQTLKDFQYME-EGKDQGLN 543
N +G++ + AL ++EYLI GSE+ ++ I L F+Y+E GKD G+N
Sbjct: 71 YANTNGQSEQQTL-ALTIIEYLIANGSERAVDDILDHYSKISVLSSFEYVEPNGKDAGIN 129
Query: 544 VREKAKQLANLL 579
VR+K + + L+
Sbjct: 130 VRKKVETILGLI 141
>08_02_1633 + 28392378-28393445
Length = 355
Score = 65.3 bits (152), Expect = 3e-11
Identities = 37/118 (31%), Positives = 71/118 (60%), Gaps = 4/118 (3%)
Frame = +1
Query: 238 AQVKVREATSNDPW-GPSSTLMAEIADLTYNVMAFTEIMQMIWKRLNDHG--KNWRHVYK 408
A++ V+EAT+ND GP + +A IAD +++ + I ++ +R+ G K WR VYK
Sbjct: 32 AELLVQEATNNDGGVGPDARTLASIADAAFDMDDYWRIAGVLRRRMARAGDWKEWRPVYK 91
Query: 409 ALVLMEYLIKTGSEKVAMQCKENIYAIQTLKDFQYMEE-GKDQGLNVREKAKQLANLL 579
ALV++E+L+ G ++V ++ A++ L+ F ++++ G D G ++ + + +LL
Sbjct: 92 ALVVLEFLLTHGPDEVPRDFLPDVAALRDLRGFTHVDDRGFDWGACMQRRCDSVLSLL 149
>01_06_1296 + 36088467-36088582,36088697-36088819,36088938-36089607
Length = 302
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +1
Query: 241 QVKVREATSNDPWGPSSTLMAEIADLTYNVMAFTEIMQMIWKRLNDHGKN-WRHVYKALV 417
Q+ EATS D P+ M+ IA + + + I ++ KR + WR YKAL+
Sbjct: 38 QLMTEEATSGDASPPNVKTMSLIARQAFEIDEYVRISDILHKRFARFDRRQWREAYKALL 97
Query: 418 LMEYLIKTGSEKVAMQCKENIYAIQTLKDFQYMEE 522
L+E+L+ G VA++ + + I+ + FQ+++E
Sbjct: 98 LLEHLLTHGPRSVALEFQRDREVIEQMVSFQHIDE 132
>04_03_0690 + 18751601-18753667
Length = 688
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +1
Query: 307 IADLTYNVMAFTEIMQMIWKRLNDHGKNWRHVYKALVLMEYLIKTGSEKVAMQCKENIYA 486
+A L ++ E+ +M WK LND K W H K +V + TG ++ C + +
Sbjct: 277 LAVLGVERLSIDEVQRMEWKLLNDKMKKWVHGVKTVVRS---LLTGERRI---CDQVLAV 330
Query: 487 IQTLKDFQYMEEGK 528
L+D ++E K
Sbjct: 331 SDELRDECFVESTK 344
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +1
Query: 82 TFNGSECFSM*FCFCDRVVEAIFKMPRARDEMQVNVAGLRRNIKNLAHNYSDAQVKVREA 261
TF+ S F CF + EA K + E + N++ K LA Y A V+ R A
Sbjct: 622 TFDDSGQFYCPVCFYTKATEAYQKAKKTYSEARKNLSAFLGR-KQLAEQYQQAAVRQRAA 680
Query: 262 TSND 273
S D
Sbjct: 681 NSED 684
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 32.7 bits (71), Expect = 0.22
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Frame = +1
Query: 172 EMQVNVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADL-TYNVMAFTEI 348
+M ++ + +K + + A V EATS + GP + EI DL + E+
Sbjct: 363 KMTAGMSSMSFKMKEIFQGQTPADKIVEEATSENLDGPDWSANLEICDLINTEKVNSVEL 422
Query: 349 MQMIWKRLNDHGKNWRHVYKALVLMEYLIKTGSEKVAMQCKENIY--AIQTLKDFQYMEE 522
++ I KR+ K+ R Y +LVL+E ++K + + E + ++ + D Q +
Sbjct: 423 IRGIKKRI--MLKDARVQYLSLVLLETIVKNCEKAFSEVAAERVLDEMVRLIDDPQTVVN 480
Query: 523 GKDQGLNVRE 552
+++ L + E
Sbjct: 481 NRNKALMLIE 490
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 31.9 bits (69), Expect = 0.39
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +1
Query: 238 AQVKVREATSNDPWGPSSTLMAEIAD-LTYNVMAFTEIMQMIWKRLNDHGKNWRHVYKAL 414
A V+V +ATS GP TL +I D + + E+++ + KRL KN + + AL
Sbjct: 4 AAVRVDKATSELLLGPDWTLNIDICDAVNSDHGQAKEVIKALKKRLQH--KNSKVQFFAL 61
Query: 415 VLMEYLIKTGSEKVAMQCKE 474
L+E L+K + V Q E
Sbjct: 62 TLLETLMKNCGDHVHSQVVE 81
>08_02_1362 + 26406710-26408530
Length = 606
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 295 LMAEIADLTYNVMAFTEIMQMIWKRLNDHGKNWRHVYKALV 417
L A L +A E+++M W LN + W H +A+V
Sbjct: 192 LAESAAHLGVEAVAIEEVLRMEWGVLNQRIRRWSHAVRAVV 232
>09_02_0317 +
7186148-7186243,7186406-7186572,7186766-7186878,
7187059-7187133,7187215-7187328,7187545-7187612,
7187690-7187773,7187966-7188019,7188104-7188184,
7188279-7188372,7188501-7188574,7188656-7188766,
7188976-7189032,7189119-7189223,7189584-7189687,
7190021-7190186,7190279-7190416
Length = 566
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 104 FRCDFVFVIVSLKRFSRCPG 163
F CD+ + ++S+KR SR PG
Sbjct: 425 FDCDYAYAMMSVKRHSRSPG 444
>03_05_0871 + 28396964-28399843
Length = 959
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +1
Query: 241 QVKVREATSNDPWGPSSTLMAEIADLTYNVMAFTEIMQMIWKRLNDH 381
++K R + D W +++++ E+ D++ + + T +W+R + H
Sbjct: 112 EIKSRFQSIIDGWAKNASMLRELRDMSSSSSSVTSAADSLWRRSSCH 158
>07_01_0978 + 8262778-8262859,8262931-8263505
Length = 218
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +3
Query: 396 ARLQSSGPDGVP----HQDRQRESGDAM*REHLCDTDIKGFP--VHGRRKGSGSQRAGEG 557
A L+ + P GVP H+ G ++ CD +G +H RR+G G +R GEG
Sbjct: 43 AALRPAPPVGVPALEGHEAAVACHGLVFLQDVRCDARHEGRQAVLHQRRRG-GRRRVGEG 101
Query: 558 EAA 566
EAA
Sbjct: 102 EAA 104
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 160 RARDEMQVNVAG--LRRNIKNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADLTYNVM 333
R R+ + N G + R+I+ D + +V ++ + S +++A AD+T NV+
Sbjct: 129 RRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSAGLETAATSGSILARTADMTGNVL 188
Query: 334 A 336
A
Sbjct: 189 A 189
>05_03_0323 - 12424243-12424776
Length = 177
Score = 24.2 bits (50), Expect(2) = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 312 RPHVQRHGLHGDHADDMEAFK*PRQELEAR 401
RPHV+ +HG D+ + R++ EA+
Sbjct: 85 RPHVEDDSVHGSLHDETDGEATAREQREAQ 114
Score = 22.2 bits (45), Expect(2) = 6.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 513 HGRRKGSGSQRAGEGEA 563
HGR +G+G G G A
Sbjct: 128 HGRGRGNGGNGRGRGSA 144
>06_03_0287 -
19168685-19168735,19168847-19168884,19169517-19169727,
19171461-19171643,19171879-19172028,19172161-19172256,
19172378-19172464,19172535-19172741,19172823-19173047,
19173150-19173261,19173397-19173453,19175522-19176882
Length = 925
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 180 SERSRPQKEYKEPRTQLFRCSGQSSRG-DFKRPMGSVQHAHGGDRRPHVQRHGLHGDHAD 356
S R+R KE+KE + + S S+RG D+ VQ DR ++ R G G +
Sbjct: 728 SYRTRISKEFKESKGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGN 787
Query: 357 D 359
+
Sbjct: 788 E 788
>04_04_0924 -
29449285-29449290,29449386-29449575,29449669-29449772,
29449845-29449976,29450064-29450162,29450439-29450451,
29450688-29450719,29450802-29450921,29450992-29451105,
29451192-29451325,29454014-29454251
Length = 393
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 402 LQSSGPDGVPHQDRQRESGDAM 467
++ SG DG H++ +ESG+A+
Sbjct: 40 VEDSGGDGAAHEEEDKESGEAL 61
>02_03_0357 + 18075171-18077240
Length = 689
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 331 MAFTEIMQMIWKRLNDHGKNWRHVYKALV 417
++ E+ ++ WK LND K W K +V
Sbjct: 283 LSIDEVQRIEWKHLNDKMKKWVQAVKTVV 311
>01_06_1411 + 37127098-37128279
Length = 393
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +3
Query: 234 RCSGQSSRGDFKRPMGSVQHAHGGDRRPHVQRHGLHGDHADDMEAFK*PRQEL 392
R S+R R G H H + V R G H DH D PRQEL
Sbjct: 76 RLPASSARARAWRLRGDRLHLHLRHHQFPVYRRGHHPDHDHDPLLHPLPRQEL 128
>08_01_0191 +
1590948-1591607,1591694-1592176,1592449-1592451,
1592555-1592992
Length = 527
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 516 GRRKGSGSQRAGEGEAAGQSTER 584
G+ + G QR GEGE++ TER
Sbjct: 227 GQARSEGRQRYGEGESSESETER 249
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/83 (24%), Positives = 35/83 (42%)
Frame = +3
Query: 174 DASERSRPQKEYKEPRTQLFRCSGQSSRGDFKRPMGSVQHAHGGDRRPHVQRHGLHGDHA 353
DA+ S K ++ R+ L S ++ G++++ + G R H + H H DH
Sbjct: 1272 DATSDSNNHK-HRRSRS-LEESSDDAAAGEYEKVRNGKRPHKTGHHRHHHRHHHHHHDHR 1329
Query: 354 DDMEAFK*PRQELEARLQSSGPD 422
E RQ+ + L+ D
Sbjct: 1330 SSSEPNDKKRQDGQKALEGGNVD 1352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,206,873
Number of Sequences: 37544
Number of extensions: 362295
Number of successful extensions: 1160
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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