Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a09f
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69885-2|CAC35825.1| 469|Caenorhabditis elegans Hypothetical pr... 217 4e-57
Z69885-1|CAC35824.1| 467|Caenorhabditis elegans Hypothetical pr... 217 4e-57
Z67754-1|CAA91751.1| 483|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.20
AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein. 30 1.1
AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein. 30 1.1
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 29 2.4
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 3.2
Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical pr... 27 7.4
U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone... 27 7.4
Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z69885-2|CAC35825.1| 469|Caenorhabditis elegans Hypothetical
protein T04C10.2b protein.
Length = 469
Score = 217 bits (531), Expect = 4e-57
Identities = 92/133 (69%), Positives = 121/133 (90%)
Frame = +1
Query: 181 VNVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADLTYNVMAFTEIMQMI 360
++++ +RR +KN+A+N+SDAQVKVREATSNDPWGPS+ LM+EIADLT+N MAFTEIM ++
Sbjct: 1 MSISTIRRQVKNVAYNFSDAQVKVREATSNDPWGPSTALMSEIADLTHNPMAFTEIMSIV 60
Query: 361 WKRLNDHGKNWRHVYKALVLMEYLIKTGSEKVAMQCKENIYAIQTLKDFQYMEEGKDQGL 540
WKRLND GKNWRHVYK+LVL+++LIK G EKVA QC+EN++ I+TLKDFQ++E+ +DQGL
Sbjct: 61 WKRLNDSGKNWRHVYKSLVLLDFLIKCGHEKVAQQCRENVFTIETLKDFQHVEDNRDQGL 120
Query: 541 NVREKAKQLANLL 579
N+REKAKQ+ +LL
Sbjct: 121 NIREKAKQITSLL 133
>Z69885-1|CAC35824.1| 467|Caenorhabditis elegans Hypothetical
protein T04C10.2a protein.
Length = 467
Score = 217 bits (531), Expect = 4e-57
Identities = 92/133 (69%), Positives = 121/133 (90%)
Frame = +1
Query: 181 VNVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSTLMAEIADLTYNVMAFTEIMQMI 360
++++ +RR +KN+A+N+SDAQVKVREATSNDPWGPS+ LM+EIADLT+N MAFTEIM ++
Sbjct: 1 MSISTIRRQVKNVAYNFSDAQVKVREATSNDPWGPSTALMSEIADLTHNPMAFTEIMSIV 60
Query: 361 WKRLNDHGKNWRHVYKALVLMEYLIKTGSEKVAMQCKENIYAIQTLKDFQYMEEGKDQGL 540
WKRLND GKNWRHVYK+LVL+++LIK G EKVA QC+EN++ I+TLKDFQ++E+ +DQGL
Sbjct: 61 WKRLNDSGKNWRHVYKSLVLLDFLIKCGHEKVAQQCRENVFTIETLKDFQHVEDNRDQGL 120
Query: 541 NVREKAKQLANLL 579
N+REKAKQ+ +LL
Sbjct: 121 NIREKAKQITSLL 133
>Z67754-1|CAA91751.1| 483|Caenorhabditis elegans Hypothetical
protein C34E11.1 protein.
Length = 483
Score = 105 bits (253), Expect = 2e-23
Identities = 46/122 (37%), Positives = 82/122 (67%), Gaps = 4/122 (3%)
Frame = +1
Query: 226 NYSDAQVKVREATSNDPWGPSSTLMAEIADLTYN--VMAFTEIMQMIWKRLNDHGKN-WR 396
NY A + VREAT+ DPWGP+ M +I + T + + F + +++R+ ++ K+ WR
Sbjct: 38 NYPKAMMDVREATNEDPWGPTGPQMKKICEYTRSRYMEDFYNVYTPLFQRMLENNKDAWR 97
Query: 397 HVYKALVLMEYLIKTGSEKVAMQCKENIYAIQTLKDFQYMEE-GKDQGLNVREKAKQLAN 573
VYK+L+L++YL+K GSE+ + +E Y ++ L+ ++Y++E GKDQG+N+R + KQ+
Sbjct: 98 RVYKSLILLDYLLKNGSERFVQEAREKAYELRRLESYKYIDEKGKDQGINIRHRVKQILE 157
Query: 574 LL 579
++
Sbjct: 158 MM 159
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 32.7 bits (71), Expect = 0.20
Identities = 25/94 (26%), Positives = 41/94 (43%)
Frame = +3
Query: 150 QDAPGPGRDASERSRPQKEYKEPRTQLFRCSGQSSRGDFKRPMGSVQHAHGGDRRPHVQR 329
+DAP RD SRP+ +++ R+Q R + + ++ P +Q R P +
Sbjct: 265 KDAPATVRDNRSPSRPRGDFRRDRSQ-SRGAETHCQQSYQPPADPLQDRSRNGRSPPMGT 323
Query: 330 HGLHGDHADDMEAFK*PRQELEARLQSSGPDGVP 431
H +G +A + EL +R S G VP
Sbjct: 324 HSHYGQNAKPAQNGNTSHYELRSR--SRGRATVP 355
>AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein.
Length = 553
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = -3
Query: 507 EIL*CLYRINVLFTLHRHFLAAGLDEVLHQDQSFVNVPPVLAVV--I*TLPYHL-HDLRE 337
+++ C++ +N L LH+ L +L ++ SF+N+PP++ + + TLP + H+ +E
Sbjct: 449 QLMKCIHELNRLNELHKQQL-----NILRENLSFLNLPPLVVEMFQLSTLPLPVNHNNQE 503
Query: 336 GH 331
H
Sbjct: 504 NH 505
>AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein.
Length = 556
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = -3
Query: 507 EIL*CLYRINVLFTLHRHFLAAGLDEVLHQDQSFVNVPPVLAVV--I*TLPYHL-HDLRE 337
+++ C++ +N L LH+ L +L ++ SF+N+PP++ + + TLP + H+ +E
Sbjct: 452 QLMKCIHELNRLNELHKQQL-----NILRENLSFLNLPPLVVEMFQLSTLPLPVNHNNQE 506
Query: 336 GH 331
H
Sbjct: 507 NH 508
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
protein K04G2.8b protein.
Length = 1188
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 224 CARFFIFLLRP-ATFTCISSRARGILKIASTTRSQKQNHIEKHSL 93
C + LL P A FT + A GILK S + H+E SL
Sbjct: 315 CLKVLASLLSPDARFTSLVDSATGILKYVSQYLANTSTHLELRSL 359
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
protein K04G2.8a protein.
Length = 1186
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 224 CARFFIFLLRP-ATFTCISSRARGILKIASTTRSQKQNHIEKHSL 93
C + LL P A FT + A GILK S + H+E SL
Sbjct: 315 CLKVLASLLSPDARFTSLVDSATGILKYVSQYLANTSTHLELRSL 359
>Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical
protein K01C8.5 protein.
Length = 707
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/104 (20%), Positives = 44/104 (42%)
Frame = +3
Query: 144 DFQDAPGPGRDASERSRPQKEYKEPRTQLFRCSGQSSRGDFKRPMGSVQHAHGGDRRPHV 323
D+ D PGP S + Y+E R +L + +GD R + ++ R+ +
Sbjct: 201 DYDDQPGPSNRHYGVSSHPEYYREDRWRLAEGDYEVDKGDGSRQLNKEKYLK-KRRKQMI 259
Query: 324 QRHGLHGDHADDMEAFK*PRQELEARLQSSGPDGVPHQDRQRES 455
+R + + +++ E + ++ + R P + H + ES
Sbjct: 260 ERESVDSEISEEEEEEEIYNKQTKRRRSQKTP--IQHNKNRTES 301
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 224 CARFFIFLLRP-ATFTCISSRARGILKIASTTRSQKQNHIEKHSL 93
C + LL P A FT + A GILK S + H+E SL
Sbjct: 315 CLKVLASLLSPDARFTSLVDSATGILKYVSQYLANTSTHLELRSL 359
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 291 HAHGGDRRPHVQRHGLHGDHADDME 365
H H G H HG H H DD E
Sbjct: 686 HGHHGAHHEHGAHHGAHHGHHDDKE 710
>Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical
protein F44A6.2 protein.
Length = 534
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = -3
Query: 507 EIL*CLYRINVLFTLHRHFLAAGLDEVLHQDQSFVNVPPVL 385
+++ C++ +N L LH+ L +L ++ SF+N+PP++
Sbjct: 452 QLMKCIHELNRLNELHKQQL-----NILRENLSFLNLPPLV 487
>U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone
receptor familymember CNR14 protein.
Length = 534
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = -3
Query: 507 EIL*CLYRINVLFTLHRHFLAAGLDEVLHQDQSFVNVPPVL 385
+++ C++ +N L LH+ L +L ++ SF+N+PP++
Sbjct: 452 QLMKCIHELNRLNELHKQQL-----NILRENLSFLNLPPLV 487
>Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical
protein C11G6.1 protein.
Length = 643
Score = 27.1 bits (57), Expect = 9.8
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 141 SDFQDAPGPGRDASERSRPQKEY-KEPRTQLFRCSGQSSRGDFKRPMGSVQHAHGGDRRP 317
S F+D GP SE +P K Y K P T S SSR +G+ G RP
Sbjct: 338 SPFKDDSGPAFRLSELVKPNKPYLKLPGTGSNPGSAPSSRPGSSMSIGTPTKVKGLPGRP 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,417,124
Number of Sequences: 27780
Number of extensions: 294604
Number of successful extensions: 833
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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