Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a08r
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    31   0.17 
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.53 
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.8  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   5.0  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    26   5.0  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   6.6  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 21/86 (24%), Positives = 44/86 (51%)
 Frame = +2

Query: 287  GPLGLKSFDAVGPVGHVVMVRGCLNCQRQILITLSVHNLEVDLVVLPQRNELPADFWTRL 466
            GP GL + D +   GH V++    + +   L+   + N+++D  V+ +R +L  D    +
Sbjct: 1764 GPAGLAAADQLNRAGHHVVIYERAD-RPGGLLQYGIPNMKLDKKVVERRIQLMIDEGIEV 1822

Query: 467  VLAIAVGKSAIVAVLIVQRQSETVAL 544
            +  + VGK+  V++  + +  + V L
Sbjct: 1823 LTNVEVGKNGDVSLDELHKVYDAVVL 1848


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -2

Query: 745 EKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 614
           +K   I + +KS + ++   K+++ NK+N +E A Q W +  K+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 718 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 626
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 26/96 (27%), Positives = 36/96 (37%)
 Frame = -2

Query: 400  IVNTQRNQYLTLAVQTTPNHNHMAYGANSVEGFKAQWTLQPAKYDNDVLFFMYNREYNEA 221
            +V+T  +Q+L +     P     A+G NS+   KA     P   DN +     N   N  
Sbjct: 813  LVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPV-IDNPL-----NVRINAI 866

Query: 220  LVLSRPTDTWGNRMAFGYSGRVVGSPEQYAWGIKAF 113
            L   R  D     M   Y  R  G P+  +W    F
Sbjct: 867  LGKLRSLDKGSTIMPSLYLVRGDGDPQLRSWFFSHF 902


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 177 AMRLPQVSVGLESTNASLYSRLYMKNKTSLSYLAGCRV 290
           A+RLP + V   +  A + +   +K K ++ ++AGCRV
Sbjct: 577 ALRLPPILVQRVTGEAIISAIFDIKAKRAVVHVAGCRV 614


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 186 LPQVSVGLESTNASLYSRLYMKNKTSLSYLAG 281
           LPQV++G  S +A     L  +N+T L+ ++G
Sbjct: 65  LPQVNIGANSFSAETPVDLKKENETELANISG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,514
Number of Sequences: 5004
Number of extensions: 59282
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)