Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a08r
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496... 34 0.14
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990... 31 0.97
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799... 31 0.97
08_02_1497 - 27548328-27548534,27548876-27548978,27549074-275491... 29 3.9
04_01_0623 - 8198301-8198504,8198805-8198907,8199065-8199144,819... 29 3.9
06_01_1082 - 8847795-8848033,8848511-8848724 28 6.9
11_01_0146 + 1224143-1224409,1224760-1224888,1225759-1225815,122... 28 9.1
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 28 9.1
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 28 9.1
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 28 9.1
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 28 9.1
>06_02_0200 - 12946139-12946282,12947636-12947842,12949506-12949629,
12950167-12950369,12950922-12951620,12951723-12951784,
12952395-12952404,12954905-12957631
Length = 1391
Score = 33.9 bits (74), Expect = 0.14
Identities = 25/92 (27%), Positives = 39/92 (42%)
Frame = +2
Query: 185 VTPGVGWPREHQRLVVFAIVHEEQNVVVVLSGLQGPLGLKSFDAVGPVGHVVMVRGCLNC 364
V P V RL V + E N + + ++ ++ DA GP G ++ G N
Sbjct: 1200 VFPMVALNESMTRLAVGDAIGEIHNATIRVYDIESVTKIRILDASGPPGLPSLLDGSSNT 1259
Query: 365 QRQILITLSVHNLEVDLVVLPQRNELPADFWT 460
ILIT +LE + +V N L +W+
Sbjct: 1260 TATILITALSFSLEGEGLVAFSENGLMIRWWS 1291
>09_06_0106 -
20898480-20898680,20898762-20898864,20898953-20899047,
20899113-20899135,20899725-20899799,20900219-20900267,
20900349-20900414,20901257-20901306,20901688-20901812,
20903488-20903600
Length = 299
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2
Query: 307 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 197
GF WT +P K+DN F RE +E L L PTD
Sbjct: 181 GFDGAWTKEPLKFDNS-YFLELLREESEGL-LKLPTD 215
>04_04_1020 +
30179214-30179285,30179597-30179671,30179839-30179947,
30180425-30180642,30180729-30181309,30181387-30182185
Length = 617
Score = 31.1 bits (67), Expect = 0.97
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -2
Query: 529 ALTLDDENSNDG-RLAYGDGKDKTSPKVSWKFVPLWENNKVYFKIVNTQRNQYLTLAVQT 353
A + DE+ DG R K+ + +P+W + VYF I NTQ T Q
Sbjct: 357 AAIVSDEDLEDGDRWRLCTVSQVEEVKILLRLIPIWLTSAVYF-IANTQAQ--TTFVQQG 413
Query: 352 TPNHNHMAYGANSV 311
T +A GA SV
Sbjct: 414 TKTDGRIARGAFSV 427
>08_02_1497 -
27548328-27548534,27548876-27548978,27549074-27549153,
27549245-27549327,27549899-27549947,27550028-27550093,
27550254-27550303,27550762-27550886,27551842-27551954
Length = 291
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 307 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 197
GF+ WT +P K+DN + E +E L L PTD
Sbjct: 171 GFEGAWTQEPLKFDNSYFLELLKGE-SEGL-LKLPTD 205
>04_01_0623 -
8198301-8198504,8198805-8198907,8199065-8199144,
8199239-8199321,8199593-8199641,8199736-8199801,
8200118-8200167,8200299-8200423,8200568-8200683
Length = 291
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 307 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 197
GF WT P K+DN F +E +E L L PTD
Sbjct: 172 GFDGAWTKDPLKFDNS-YFIELLKENSEGL-LKLPTD 206
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 292 WTLQPAKYDNDVLFFMYNREYNEALVL 212
W Y DVL F YN+EY++ V+
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDVAVV 85
>11_01_0146 +
1224143-1224409,1224760-1224888,1225759-1225815,
1225903-1226201,1226474-1226565,1226946-1227160,
1227205-1227228,1227314-1227497,1227612-1227742
Length = 465
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 253 FFMYNREYNEALVLSRPTDTWGNRMAFGYSGRVVGSPEQY 134
+ Y + +L R T+ N M G+SG+ + + EQY
Sbjct: 252 YLHYGARASRVEILKRKNGTFSNCMLRGFSGKYIYNGEQY 291
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 27.9 bits (59), Expect = 9.1
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Frame = +2
Query: 383 TLSVHNLEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIV----AVLIVQRQ------SE 532
T SV LEVD + +R ELPA RL+ + V S I+ A+++ Q ++
Sbjct: 77 TASVQTLEVDKATMMRRCELPARD-LRLLDPLFVYPSTILGRERAIVVNLEQIRCVITAD 135
Query: 533 TVALVHQLNVVFCEYKSELNREAL 604
V L++ L+ +Y +EL R L
Sbjct: 136 EVLLLNSLDSYVLQYAAELQRRLL 159
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 344 VRGCLNCQRQILITLSVHNLEVDLVVLPQRNELPADFWTRLVLAI 478
+RG L+ QIL E++L P+++ D W + LA+
Sbjct: 467 IRGVLDLTEQILGQFGFRYYEINLSTRPEKSVGSDDIWEKATLAL 511
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 388 QRNQYLTLAVQTTPNHNHMAYGANS 314
QR Q L+ + +T P +NH ++G+N+
Sbjct: 790 QRKQLLSFSQRTVPVNNHSSHGSNN 814
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 287 GPLGLKSFDAVGPVGHVVMVRGCLNCQRQILITLSVHNLEVDLVVLPQRN-ELPADFWTR 463
GP GL + D + +GH V V + + L+ V N++ D + + QR L A+
Sbjct: 1805 GPAGLAAADQLNKMGHFVTVFERAD-RIGGLMMYGVPNMKTDKIEIVQRRVNLMAEEGIT 1863
Query: 464 LVLAIAVGKSAIVAVLIVQRQSETVAL 544
V+ VG + ++ ++ +++ V L
Sbjct: 1864 FVVNANVGSDPLYSIERLRSENDAVIL 1890
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,769,580
Number of Sequences: 37544
Number of extensions: 388916
Number of successful extensions: 1247
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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