Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a08r
         (746 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB001601-1|BAA25908.1| 1041|Homo sapiens ATP-dependent RNA helic...    31   5.8  
AK126503-1|BAC86570.1|  413|Homo sapiens protein ( Homo sapiens ...    30   7.7  

>AB001601-1|BAA25908.1| 1041|Homo sapiens ATP-dependent RNA helicase
           #3 protein.
          Length = 1041

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 410 DLVVLPQRNELPADFWTRLVLAIAVGKSAIVAVLIVQRQSETV-ALVHQLNVVFCEYKS 583
           +L+VLP    LP+D   R+      G   +V    +   S T+  +++ L+  FC+ KS
Sbjct: 641 ELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSPTIEGIIYVLDPGFCKQKS 699


>AK126503-1|BAC86570.1|  413|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44539 fis, clone UTERU3005205. ).
          Length = 413

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 433 PLWENNKVYFKIVNTQRNQYLTLAVQTTPNHNHMAYGA----NSVEGFKAQWTLQPAKYD 266
           P+W +N+      N+QR   +    Q +P H+H A G     N ++ F  ++  +P+ + 
Sbjct: 142 PVWLHNQDLLPDANSQRVYQIFKDDQCSPRHSHQAQGTSRLINKLDCF--EYAFEPSNFS 199

Query: 265 NDV 257
           N +
Sbjct: 200 NSL 202


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,724,325
Number of Sequences: 237096
Number of extensions: 2187479
Number of successful extensions: 5229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5229
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)