Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a08f
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.025
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.40
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 2.8
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 4.9
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 4.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 6.5
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 6.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.6
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 8.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 8.6
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 8.6
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 33.5 bits (73), Expect = 0.025
Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 88 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 267
+PT S TP S TTA+S T PL N +T T A S+ +S NS TT +A
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNS--TTATSAS 469
Query: 268 STP-TSYGS 291
STP TS S
Sbjct: 470 STPLTSVNS 478
Score = 29.1 bits (62), Expect = 0.53
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +1
Query: 88 MPTKPQSPTPNSK---TIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR* 258
+P+ S TP S T T+ASS P+T++ ST T A S+ +S +S +T
Sbjct: 282 LPSSTPSSTPLSSANSTTATSASSTPLTSV------NSTTTTSASSTPLSSVSSANSTTA 335
Query: 259 TAW-STPTS 282
T+ STP S
Sbjct: 336 TSTSSTPLS 344
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 121 SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS-TPTSYGSKA 297
+ T T+ASS P+T++ A ++ T + S T++ T +A S T TS S A
Sbjct: 347 NSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTA 406
Query: 298 P 300
P
Sbjct: 407 P 407
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 121 SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS-TPTSYGSKA 297
+ T T+ASS P+T++ A ++ T + S T++ T +A S T TS S A
Sbjct: 461 NSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTA 520
Query: 298 P 300
P
Sbjct: 521 P 521
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 88 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRT 201
+PT S TP S TTA+S T PL N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.5 bits (63), Expect = 0.40
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 174 EKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 305
+K I + +KS + ++ K+++ NK+N +E A Q W + K+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 201 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 293
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 144 ILVADYDHSVEKSKQIYEDKKSEVITNVVN-KLIRNNKMNCMEYAYQLWLQGSKDIVREC 320
+LV + + E+S + + + N+ KL NN +E Q +LQG K+ +++C
Sbjct: 152 VLVIELLETQERSSKRRRREGPTMKANIQRQKLDFNNLKKAIELRNQKFLQGIKEYIKKC 211
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +3
Query: 81 SLYANETSVSDSKLEDDLY-----NSILVADYDHSVEKSKQIYEDKKSEVITNV 227
+L N S K++D L+ N L +HS K K+ YE S ++TN+
Sbjct: 738 NLMENVEEESIDKIKDILFDIHVDNLYLFPQLEHSFYKRKKNYEKALSVLVTNI 791
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 120 LEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNN 251
LE+D + ++ + ++ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +1
Query: 88 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 267
+PT + T ++T TTA+ + TT A T+ +Q T + ET TA
Sbjct: 1147 LPTTGATGTAGTETQLTTATEVQPTTGATGTAGTETQVTTGTETQA--TTATETQATTAT 1204
Query: 268 STPTSYGS 291
T+ G+
Sbjct: 1205 EVQTTTGA 1212
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.6
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 106 SPTPNSKTIFT-TASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTS 282
S +P+S + T T+SSL ++IP ++ S+ + SS S T S ++ + S+ +S
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278
Query: 283 YGS 291
S
Sbjct: 279 SSS 281
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 396 TLDDENSNDGRLAYGDGKDKTSPKVSWKFVPLWENNKVYFKIV 524
T DD + ++ + GKD +PK +W P+W+ K+Y +V
Sbjct: 77 TEDDSGEDSYQVEWESGKDPLAPK-NW---PMWK--KIYTLLV 113
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 93 NETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 266
+ TS + + LE V E++KQ+ K+SE++ + NKL+ N ++ +
Sbjct: 642 DSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESL 699
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 8.6
Identities = 30/123 (24%), Positives = 57/123 (46%)
Frame = +1
Query: 88 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 267
+ T S P+S T+ +++SSL +++ P+ A+ S+ + SS +S T S + T
Sbjct: 663 LSTYSSSVIPSSSTLVSSSSSLIVSSSPV--ASSSSSPIPSSSSLVS-TYSASLSNITHS 719
Query: 268 STPTSYGSKAPKIXXXXXXXXXXXXXXQKTTLS*CTSATVSL*RWTMRTATMADLPTAMA 447
S + S + I T LS TS++ + T+ + ++LP+A A
Sbjct: 720 SLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVSNIS-SNLPSATA 778
Query: 448 RTR 456
++
Sbjct: 779 SSQ 781
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 8.6
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = +1
Query: 151 LPITTIPLKRANRSTRTRRAKSS-------QMS*TNSYETTR*TAWSTPTSYGSKA 297
LP+T PL+ AN S + + Q+S T S T TA S P Y S A
Sbjct: 271 LPVTKTPLEEANSSPAAQNQHITTVDHVHPQVSMTPSLSTNN-TATSVPAPYSSAA 325
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 188 DLR-GQEERSHHKCRKQTHTKQQDEL 262
D+R GQEE + HT QQDEL
Sbjct: 7 DIRNGQEEDDLFSENEDNHTSQQDEL 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,942
Number of Sequences: 5004
Number of extensions: 39829
Number of successful extensions: 162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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