Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a08f
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0693 - 26334574-26336121 31 0.54
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799... 31 0.72
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578... 29 2.2
11_06_0232 + 21559467-21559532,21559586-21560200 29 3.8
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 28 6.7
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 28 6.7
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 28 6.7
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 28 6.7
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 28 6.7
09_02_0408 - 8638298-8638594,8638717-8639103,8639415-8640413,864... 27 8.9
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 27 8.9
>11_06_0693 - 26334574-26336121
Length = 515
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 28 PTRKR*KPFKLFCVFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLKR 180
P R+R P +L F+ R C+P+ P SP +S SS P +PL R
Sbjct: 38 PARRR--PLELLA-FAVRHCLPSSPPSPHHHSLAALLLLSSPPPPALPLLR 85
>04_04_1020 +
30179214-30179285,30179597-30179671,30179839-30179947,
30180425-30180642,30180729-30181309,30181387-30182185
Length = 617
Score = 31.1 bits (67), Expect = 0.72
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 390 ALTLDDENSNDG-RLAYGDGKDKTSPKVSWKFVPLWENNKVYFKIVNTQRNQYLTLAVQT 566
A + DE+ DG R K+ + +P+W + VYF I NTQ T Q
Sbjct: 357 AAIVSDEDLEDGDRWRLCTVSQVEEVKILLRLIPIWLTSAVYF-IANTQAQ--TTFVQQG 413
Query: 567 TPNHNHMAYGANSV 608
T +A GA SV
Sbjct: 414 TKTDGRIARGAFSV 427
>04_04_1267 - 32257035-32257337,32257423-32257570,32257656-32257893,
32257994-32258351,32258791-32258969,32259071-32259175,
32259539-32260871
Length = 887
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 LFCVFSWRLCMPTKPQSPTPNSKTIF---TTASSLPITTIPLKRANRSTRTRRAKSSQMS 228
L C+ LC+ P + P S +F A++LP P+ A+R++ +++ + S
Sbjct: 815 LLCIHIGLLCVQDNPNNRPPMSSVVFMLENEAAALPAPIQPVYFAHRASGAKQSGGNTSS 874
Query: 229 *TNSYETT 252
N+ T
Sbjct: 875 SNNNMSLT 882
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 106 SPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYET 249
+P P ++T ASS P T P + +R R RRA+++Q +S T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 162 DHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLW--LQGSKDIVREC 320
D +++ K+ Y + + + N + ++ N + AY+LW G K +REC
Sbjct: 301 DEKLQELKRDYGEGAHKAVMNALMEMKEYNVLADRSIAYELWNYKDGRKATLREC 355
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 27.9 bits (59), Expect = 6.7
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Frame = -3
Query: 536 TLSVHNLEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIV----AVLIVQRQ------SE 387
T SV LEVD + +R ELPA RL+ + V S I+ A+++ Q ++
Sbjct: 77 TASVQTLEVDKATMMRRCELPARD-LRLLDPLFVYPSTILGRERAIVVNLEQIRCVITAD 135
Query: 386 TVALVHQLNVVFCEYKSELNREAL 315
V L++ L+ +Y +EL R L
Sbjct: 136 EVLLLNSLDSYVLQYAAELQRRLL 159
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/98 (22%), Positives = 42/98 (42%)
Frame = +3
Query: 114 SKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 293
+K D I++ D EK+ ++ + SE + N + NC EY L +
Sbjct: 241 AKKSDIKDQPIVLRRSDTESEKNDELDQTPASEPSSMSHNSANSTIRFNCREYRVILRKE 300
Query: 294 GSKDIVRECFPVEFRLIFAENNIKLMYKRDGLALTLDD 407
+ V + AE ++ +++R+G+ L +DD
Sbjct: 301 LTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDD 338
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 575 VRGCLNCQRQILITLSVHNLEVDLVVLPQRNELPADFWTRLVLAI 441
+RG L+ QIL E++L P+++ D W + LA+
Sbjct: 467 IRGVLDLTEQILGQFGFRYYEINLSTRPEKSVGSDDIWEKATLAL 511
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 531 QRNQYLTLAVQTTPNHNHMAYGANS 605
QR Q L+ + +T P +NH ++G+N+
Sbjct: 790 QRKQLLSFSQRTVPVNNHSSHGSNN 814
>09_02_0408 -
8638298-8638594,8638717-8639103,8639415-8640413,
8640501-8640655,8640768-8640855,8640941-8641044,
8641199-8641421,8641536-8641620,8641706-8642097,
8642962-8643150
Length = 972
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 482 ELPADFWTRLVLAIAVGKSAIVAVLIVQRQ 393
ELPAD + V+++A S ++AV ++QR+
Sbjct: 524 ELPADSFGAYVISMATAPSDVLAVELLQRE 553
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 123 EDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVV 230
+++L+N I+V + H V I +DK+ + + V+
Sbjct: 93 KNELWNKIMVLKFSHQVLVYFDIQQDKRKDAVKKVI 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,175
Number of Sequences: 37544
Number of extensions: 252725
Number of successful extensions: 946
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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