Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a08f
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34816| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)          31   0.56 
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  30   1.7  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               29   2.2  
SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)                    29   3.0  
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                29   3.0  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15)                28   6.9  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   28   6.9  
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     27   9.1  

>SB_34816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 21/46 (45%), Positives = 27/46 (58%)
 Frame = +2

Query: 476 EVRSSVGEQQGLLQDCEHSA*SVFDVGSSNNPEP*PHGLRGQQRRR 613
           +VR  VG+Q  LLQD EH   + F  G +NNP    H + G+ RRR
Sbjct: 57  DVRRDVGKQ--LLQD-EHRNLTCFGEGKANNPTRRKHIVNGRGRRR 99


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 24/84 (28%), Positives = 35/84 (41%)
 Frame = +1

Query: 211  KSSQMS*TNSYETTR*TAWSTPTSYGSKAPKIXXXXXXXXXXXXXXQKTTLS*CTSATVS 390
            K+ + + T    TTR T   T T+  +K P I                TT    T+AT +
Sbjct: 1419 KTREEATTKPTTTTRKTTIPTTTASETKPPTIRKTTTATTTVPATKPPTTRK-TTTATTT 1477

Query: 391  L*RWTMRTATMADLPTAMARTRRV 462
              R T +  T A+ PT +   RR+
Sbjct: 1478 QGRTTRKPTTTAEPPTTVDNLRRI 1501


>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
          Length = 592

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
 Frame = +2

Query: 5   IVLVRQRTRRAKDENRSSYSVSFRGVFVCXXXXXXXXXXXXXXXXXHPRCRLRPFR*KEQ 184
           + + R RTR+  +  R +  ++  GV +C                 HP   +  +R   Q
Sbjct: 440 VAICRYRTRQTGESTRRTRKMTSSGVAICRYRTRQVSQRGERERRHHPGVAICRYR-TRQ 498

Query: 185 TDLRGQEERSHHK--CRKQTHTKQQDELHGVRLPAMAPRLQRYRPGVLPC*VQT 340
              RG  ER +H     ++  T+Q  +           R +R+ PGV  C  +T
Sbjct: 499 VSQRGVRERRNHPGVAIRRCRTRQVSQ--------RGERERRHHPGVAICRYRT 544



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +2

Query: 143 HPRCRLRPFR*KEQTDLRGQEERSHHK----CRKQTHTKQQDELHGVRLPAMAPRLQRYR 310
           HP   +R +R   Q   RG+ ER HH     CR +T    Q      +  +    ++RYR
Sbjct: 145 HPGVAIRRYR-TRQVSQRGERERRHHPEVAICRYRTRQTGQSTRRTRKTTSSGVAIRRYR 203


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +3

Query: 72  FVASLYANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVIT 221
           F ASL A + S SDS  EDDL    ++ + DH   K++ + + +K +  T
Sbjct: 548 FRASLAAQQDSTSDSSSEDDL----IMDEKDHPQGKARSLSDKQKCKNTT 593


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
 Frame = +1

Query: 97  KPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQ-MS*TNSYETTR*T-AWS 270
           KP + TP SK     +  +  TT    +A   T T+   S+Q  +  N++ +T+ T A +
Sbjct: 383 KPPTTTP-SKATAPISDPMTTTTPTTTKATTPTTTKATASTQTAAEANTFLSTQKTDATT 441

Query: 271 TPTSYGSKAPKIXXXXXXXXXXXXXXQKTTLS--*CTSATVSL*RWTMRTATMADLPTAM 444
           + ++  ++A K               + TT S    T AT +L   T +  T     T  
Sbjct: 442 SQSTSTTEATKSQTTKATTTLSTSTTKATTTSSTSTTKATTTLSTSTTKATTTPSTSTTK 501

Query: 445 ART 453
           A T
Sbjct: 502 ATT 504


>SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)
          Length = 734

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
 Frame = +3

Query: 102 SVSDSKLEDDLYNSILVADYDHSVEKSK-QIYEDKKSEVI--TNVVNKLIRNNKMNCMEY 272
           S+S+S  E+   N     D   S E  + Q+ +D K + +  ++  NK +  +K++  E 
Sbjct: 340 SLSESSSENIKVNVSSDDDKGGSEEPQQHQLADDDKEDRLDTSDAENKQVEEDKIDEKER 399

Query: 273 AYQLWLQGSKDIVRECFPVEFRLIFAENNIKLMYKRDGLALTLDDENSNDGRLAYGDGKD 452
              +   GSK    E   +E  L  +EN   L     GLA+ +D E SN   +      D
Sbjct: 400 ENVVEQVGSKG-QNEAMTLENAL--SENKENLNQGTSGLAVVVDQEQSNGELIKEKAEND 456

Query: 453 KTS 461
            TS
Sbjct: 457 STS 459


>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 355

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 374 QARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQ 505
           Q  R +F++   +QQ+WQ   R+WQ Q   +SQLE +    E Q
Sbjct: 292 QQSRQQFEL---QQQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQ 331


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 234 KLIRNNKMNCMEYAYQLWLQGSKDIVRECF 323
           +L  NN+M    +A+  WL+G +   R+C+
Sbjct: 17  RLHNNNRMLICTFAHSTWLKGRQGSSRQCY 46


>SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15)
          Length = 257

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +3

Query: 144 ILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQ 281
           I++A +D S ++S  IY+     +  NV+N+ +R   ++ M + ++
Sbjct: 84  IIIAGFDKS-DRSLTIYQALPGNLEGNVINRSVRKQVIDAMNFDFR 128


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 94  TKPQSPTPNSKTIFTTASSLPITTIP--LKRANRSTRTRRAKSSQ 222
           T P  PTP  K   +  +++P+T +P    +  +  +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288


>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3296

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/73 (21%), Positives = 32/73 (43%)
 Frame = +1

Query: 73   SWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETT 252
            +W++    +    T ++ T+ +T SS  +TT       R+ +   A S   +   +  T+
Sbjct: 2766 TWKIEQRERHAKTTTSASTVDSTGSSKAVTTTVAATTTRTIQAAPASSDNTAANKAQSTS 2825

Query: 253  R*TAWSTPTSYGS 291
              T+    +S GS
Sbjct: 2826 SATSSEQTSSSGS 2838


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 88  MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTR 198
           + T    P+ NS++  +  S LP+T+ P+KR  + TR
Sbjct: 749 LSTNHDEPS-NSRSTHSLYSPLPVTSTPVKRFRKITR 784


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,576
Number of Sequences: 59808
Number of extensions: 314467
Number of successful extensions: 1157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)