Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a07f
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding... 97 7e-21
Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical pr... 95 4e-20
AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding... 89 3e-18
AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding... 89 3e-18
AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding... 89 3e-18
Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical pr... 81 7e-16
U40420-6|ABD63223.1| 150|Caenorhabditis elegans Lipid binding p... 46 3e-05
U40420-5|AAA81433.2| 165|Caenorhabditis elegans Lipid binding p... 46 3e-05
U64855-7|AAB04984.1| 145|Caenorhabditis elegans Lipid binding p... 44 1e-04
U40420-7|AAA81434.1| 159|Caenorhabditis elegans Lipid binding p... 36 0.019
U40420-8|AAA81435.1| 161|Caenorhabditis elegans Lipid binding p... 35 0.043
U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical pr... 33 0.17
U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 33 0.17
U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical pr... 33 0.17
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 29 2.8
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 27 8.7
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 8.7
U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF039048-13|AAB94231.1| 440|Caenorhabditis elegans Hypothetical... 27 8.7
>AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding
protein protein 6 protein.
Length = 135
Score = 97.5 bits (232), Expect = 7e-21
Identities = 48/98 (48%), Positives = 65/98 (66%)
Frame = +3
Query: 72 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 251
+ EFVG+ +K+ SENF+E+MK +GVGLITRKAA + PT+E++ +GD + STFK
Sbjct: 1 MSQEFVGR-WKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFK 59
Query: 252 TTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQK 365
T + FK G+EF+E DG VKSV FE +QK
Sbjct: 60 NTTLSFKLGQEFDETTPDGRTVKSVVNFENGKFIHIQK 97
>Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical
protein T22G5.2 protein.
Length = 137
Score = 95.1 bits (226), Expect = 4e-20
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Frame = +3
Query: 81 EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 260
+F+G+ +K+ +ENFDE+MK IGVGLITRKAA + P +E+R DG+ +N STFK T+
Sbjct: 6 DFIGR-WKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTK 64
Query: 261 MKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMT-- 434
+ FK GEEF E+ D S+ TFE L Q + V E K + T
Sbjct: 65 LSFKLGEEFVENSPDDRTYNSLFTFENGKLTHRQNKIKENHKSSVLTTWLENGKLIQTYQ 124
Query: 435 AKDVTCTRVYK 467
+ DV C R ++
Sbjct: 125 SGDVICRREWE 135
>AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding
protein protein 5 protein.
Length = 136
Score = 89.0 bits (211), Expect = 3e-18
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Frame = +3
Query: 81 EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 260
+FVG+ +K+ SENF++++K +GVGL+ RKAA A PT+E++ +G+++++ STFK T
Sbjct: 5 QFVGR-WKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTT 63
Query: 261 MKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQK--APDGLEVTYVREFGPEEMKAVMT 434
++F G EF+E DG + KS T E + VQK + R F E++ +
Sbjct: 64 LEFTLGVEFDETTPDGRQFKSTITIEDGKVVHVQKRIKDSDHDSVITRWFEGEKLITTLQ 123
Query: 435 AKDVTCTRVY 464
+ V R Y
Sbjct: 124 SGSVISRRAY 133
>AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding
protein protein 9,isoform b protein.
Length = 137
Score = 88.6 bits (210), Expect = 3e-18
Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Frame = +3
Query: 72 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 251
I+ + VGK + SSENFDE++K +GVG R A P +E +GDE+ + ++STFK
Sbjct: 3 IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 61
Query: 252 TTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAV 428
+K+K G +E ADG V SV + E + L Q++ G + + + + ++ V
Sbjct: 62 NYTLKWKLGTASDEKTADGRDVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIV 121
Query: 429 MTAKDVTCTRVYK 467
T V CTRVY+
Sbjct: 122 CTCNGVKCTRVYE 134
>AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding
protein protein 9,isoform a protein.
Length = 152
Score = 88.6 bits (210), Expect = 3e-18
Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Frame = +3
Query: 72 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 251
I+ + VGK + SSENFDE++K +GVG R A P +E +GDE+ + ++STFK
Sbjct: 18 IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 76
Query: 252 TTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAV 428
+K+K G +E ADG V SV + E + L Q++ G + + + + ++ V
Sbjct: 77 NYTLKWKLGTASDEKTADGRDVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIV 136
Query: 429 MTAKDVTCTRVYK 467
T V CTRVY+
Sbjct: 137 CTCNGVKCTRVYE 149
>Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical
protein T22G5.6 protein.
Length = 137
Score = 81.0 bits (191), Expect = 7e-16
Identities = 38/86 (44%), Positives = 58/86 (67%)
Frame = +3
Query: 81 EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 260
EF+G+ +K+ SENF+E++K IGVGL+ RKAA+ +PT+E++ DGD ++ STFK +
Sbjct: 6 EFIGR-WKLVHSENFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNK 64
Query: 261 MKFKPGEEFEEDRADGAKVKSVCTFE 338
+ FK E+F E D ++ TFE
Sbjct: 65 LAFKIREKFVEIAPDERSYNTLVTFE 90
>U40420-6|ABD63223.1| 150|Caenorhabditis elegans Lipid binding
protein protein 3,isoform b protein.
Length = 150
Score = 45.6 bits (103), Expect = 3e-05
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Frame = +3
Query: 72 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 245
I +F GK Y + SENFDEF+ GV R+ + L K+ +YN+ ++
Sbjct: 8 IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 66
Query: 246 FKTTEMK-FKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQ---KAPDGLEVTYVREFGPE 413
K T ++ G+ FE + DG K +F+ L + P+ TY +
Sbjct: 67 KKNTLYHGWELGKTFEAEGLDGVAHKITFSFKDGVLSEHHIRLNDPEHSAETYYYTIEND 126
Query: 414 EMKAVMTAKDVTCTRVYK 467
++ M +TC R +K
Sbjct: 127 QLVMKMVNNGITCRRWFK 144
>U40420-5|AAA81433.2| 165|Caenorhabditis elegans Lipid binding
protein protein 3,isoform a protein.
Length = 165
Score = 45.6 bits (103), Expect = 3e-05
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Frame = +3
Query: 72 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 245
I +F GK Y + SENFDEF+ GV R+ + L K+ +YN+ ++
Sbjct: 23 IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 81
Query: 246 FKTTEMK-FKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQ---KAPDGLEVTYVREFGPE 413
K T ++ G+ FE + DG K +F+ L + P+ TY +
Sbjct: 82 KKNTLYHGWELGKTFEAEGLDGVAHKITFSFKDGVLSEHHIRLNDPEHSAETYYYTIEND 141
Query: 414 EMKAVMTAKDVTCTRVYK 467
++ M +TC R +K
Sbjct: 142 QLVMKMVNNGITCRRWFK 159
>U64855-7|AAB04984.1| 145|Caenorhabditis elegans Lipid binding
protein protein 4 protein.
Length = 145
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Frame = +3
Query: 69 SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAAN--AVTPTVELRKDGDEYNLVTSS 242
S+ +F G+ Y++ SENFDEF+ + GV R+ +T + ++ +YN+ +
Sbjct: 2 SVPDKFFGR-YQLDKSENFDEFLSSKGVNWFVRQMIKLAGLTKIISQNQEAGKYNMENLT 60
Query: 243 TFKTTEMK-FKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQ---KAPDGLEVTYVREFGP 410
+ K T + ++ G++FE DG + + F+ L + P+ TY
Sbjct: 61 SKKNTNYQAWELGKKFEAPGLDGNQHEITFDFKDEILSEHHIRLNEPETSAETYFYTIDD 120
Query: 411 EEMKAV-MTAKDVTCTRVYK 467
+ + M + C R +K
Sbjct: 121 QNQLVMRMENNGIVCRRWFK 140
>U40420-7|AAA81434.1| 159|Caenorhabditis elegans Lipid binding
protein protein 1 protein.
Length = 159
Score = 36.3 bits (80), Expect = 0.019
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
Frame = +3
Query: 99 YKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP- 275
+ + SENFDE++ G G TRK T K ++ S+ ++ +K
Sbjct: 28 FDLDHSENFDEYLTAKGYGWFTRKLVTFATFKKVFTKTSNKNLFDYSNLTSKKDVHYKNV 87
Query: 276 --GEEFEEDRADGAKVKSVCTFEGNTLKQVQK---APDGLEVTYVREFGPEEMKAVMTAK 440
G+ F+ + D K + T + L + K D E TY F E + M+
Sbjct: 88 QLGKAFQGEGLDSTKHEITFTLKDGHLFEHHKPLEGGDAKEETYEYLFDKEFLLVRMSFN 147
Query: 441 DVTCTRVYK 467
V R YK
Sbjct: 148 GVEGRRFYK 156
>U40420-8|AAA81435.1| 161|Caenorhabditis elegans Lipid binding
protein protein 2 protein.
Length = 161
Score = 35.1 bits (77), Expect = 0.043
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Frame = +3
Query: 99 YKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKF--- 269
+ + SENFDE++ G G TRK T K+ ++ NL S + + F
Sbjct: 30 FDLDHSENFDEYLTAKGYGWFTRKLVTFATFKKVFAKNANK-NLFDYSNLTSKKDVFYKN 88
Query: 270 -KPGEEFEEDRADGAKVKSVCTF-EGNTLKQVQKAPDG--LEVTYVREFGPEEMKAVMTA 437
+ G +FE + D K + T +G+ + + +G E TY F + + M+
Sbjct: 89 VQIGSKFEGEGLDNTKHEVTFTLKDGHLFEHHKPLEEGESKEETYEYYFDGDFLIQKMSF 148
Query: 438 KDVTCTRVYK 467
++ R YK
Sbjct: 149 NNIEGRRFYK 158
>U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical
protein F08F8.9c protein.
Length = 517
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 111 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 275
SSE ++ + IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 2 SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical
protein F08F8.9a protein.
Length = 626
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 111 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 275
SSE ++ + IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 2 SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical
protein F08F8.9b protein.
Length = 624
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 111 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 275
SSE ++ + IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 2 SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 165 RKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 293
+ A + TP D+ + T++T TTE K KP E+ EE
Sbjct: 296 KPAESTETPAAGTEPSTDDGAIETTTTTTTTENKEKPEEKMEE 338
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 265 FISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSS 125
F S++ K VT S +L SST + +A+ I PT +F NSS
Sbjct: 845 FGSILDKETHVTTTPVSVALPSSTDSTQSKSAIPTIAPTMSLFGNSS 891
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +3
Query: 156 LITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTF 335
+IT+ ++ V+ +EL+ +EY L+ F + K ++ +E A K+ F
Sbjct: 230 IITQISSLVVSKFIELKVTNEEYVLLVMLFFCNPAISHKLSDKAKESLAKYQKMYCSALF 289
Query: 336 EGNTLKQVQKAPDGLE 383
+K + AP LE
Sbjct: 290 NYCQIKYKKAAPARLE 305
>U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical
protein C03B1.7 protein.
Length = 818
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +3
Query: 135 MKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAK 314
+K + G I +K + P + + +DG Y K ++FK E FE+ +
Sbjct: 241 IKVLPAGKIEKKLIKELNPEMMVGRDGRRYRQKLREAEKQATVEFKL-ENFEQTNGEAQS 299
Query: 315 VKS 323
V++
Sbjct: 300 VEN 302
>AF039048-13|AAB94231.1| 440|Caenorhabditis elegans Hypothetical
protein F16B4.11 protein.
Length = 440
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 144 IGVGLITRKAANAVTPTVELRKDGDEYNL 230
+ + L+ KA N + V +RKDGD NL
Sbjct: 166 VDISLLVDKATNYILNPVLIRKDGDMSNL 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,914
Number of Sequences: 27780
Number of extensions: 276881
Number of successful extensions: 821
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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