Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a05r
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    70   3e-13
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   4.0  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   6.9  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   6.9  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    26   6.9  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
 Frame = -2

Query: 727 RIIGLCIWVCSVLYSSIRTASASSKITMSEHILAKEGSTXXXXXXXXXXXGNEPKVFDNE 548
           ++IG      ++LYS++R AS+        ++ A +                E K   ++
Sbjct: 306 KVIGAAFTFFTILYSAVRAASSRESDDSYSYLYA-DSHDMGVSTPLEDGSSEEDK---HQ 361

Query: 547 GDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLANE----------NIASMWVKITS 398
            D   Y++ +FHI+F LA  Y    LTNW N  S   N+          + A++WVKI +
Sbjct: 362 SD---YNFIWFHIVFVLAAFYTASLLTNW-NTTSVYENQKNDVFVRIGFSYAAVWVKIIT 417

Query: 397 SWMCIGLYIWTLVAPAIFPDR 335
           SW+C GLY+W+ +AP  FP R
Sbjct: 418 SWVCHGLYVWSCLAPVFFPYR 438


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = -2

Query: 520 FFHIMFALATLYVMMTLTNWFNPNSQLANENIASMWVKITSSWMCIGLYIWTLVAPAIFP 341
           F  I F+L  L  +       +  + LAN    + + ++  + MC+   +W LV  A F 
Sbjct: 610 FTFIYFSLVPLNNLFHRAYKSSSRTHLANRYFTADYARLQINDMCVSWGLWLLVFGAKFT 669

Query: 340 DREF 329
           +  F
Sbjct: 670 ESYF 673


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 121 NINNMNLPYFISTLVIIVKRPYAFLENIVKKSFY 20
           +I    + YF     I+V R Y F ENIVK + Y
Sbjct: 845 SIGRFTIMYFDGQKFIVVAR-YLFGENIVKAALY 877


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 347 FSGQGIQLNHKSNNVEFDG 291
           +S + +QLNH++ NVE+ G
Sbjct: 304 YSPENLQLNHEAQNVEYLG 322


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 487 YVMMTLTNWFNPNSQLANENIASMWVKITSSWM 389
           ++  T  NWF  N    N  I S+   + S+WM
Sbjct: 53  WLQYTNPNWFKRNFSSGNYEINSLQSLLLSAWM 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,330
Number of Sequences: 5004
Number of extensions: 57184
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)