Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a05r
         (776 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058257-1|AAL13486.1|  465|Drosophila melanogaster GH01515p pro...   116   3e-26
AF181686-1|AAD54422.1|  465|Drosophila melanogaster membrane pro...   116   3e-26
AE014296-2737|AAF49464.2|  465|Drosophila melanogaster CG4672-PA...   116   3e-26

>AY058257-1|AAL13486.1|  465|Drosophila melanogaster GH01515p
           protein.
          Length = 465

 Score =  116 bits (280), Expect = 3e-26
 Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
 Frame = -2

Query: 739 FDKQRIIGLCIWVCSVLYSSIRTASASSKITMSEHILAKEGSTXXXXXXXXXXXGNEPKV 560
           FD   IIGL +W+  +LY+ I +A   SKI+       K   T           G+    
Sbjct: 328 FDTTNIIGLVVWLLCILYNCISSAVEVSKISHDNS--EKRVLTEALSDTEAGTDGSGKPS 385

Query: 559 FDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNS--QLANENIASMWVKITSSWMC 386
            D E + V YSWS FH++F  A+LYVMMTLTNW+ P+S  +L N N ASMWVKI SSW+ 
Sbjct: 386 TDTETEGVTYSWSMFHLVFVCASLYVMMTLTNWYKPHSEIELFNGNEASMWVKIVSSWLG 445

Query: 385 IGLYIWTLVAPAIFPDREFN 326
           + +Y W+L AP +  +R+F+
Sbjct: 446 VFIYGWSLAAPIVLTNRDFS 465


>AF181686-1|AAD54422.1|  465|Drosophila melanogaster membrane
           protein TMS1d protein.
          Length = 465

 Score =  116 bits (280), Expect = 3e-26
 Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
 Frame = -2

Query: 739 FDKQRIIGLCIWVCSVLYSSIRTASASSKITMSEHILAKEGSTXXXXXXXXXXXGNEPKV 560
           FD   IIGL +W+  +LY+ I +A   SKI+       K   T           G+    
Sbjct: 328 FDTTNIIGLVVWLLCILYNCISSAVEVSKISHDNS--EKRVLTEALSDTEAGTDGSGKPS 385

Query: 559 FDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNS--QLANENIASMWVKITSSWMC 386
            D E + V YSWS FH++F  A+LYVMMTLTNW+ P+S  +L N N ASMWVKI SSW+ 
Sbjct: 386 TDTETEGVTYSWSMFHLVFVCASLYVMMTLTNWYKPHSEIELFNGNEASMWVKIVSSWLG 445

Query: 385 IGLYIWTLVAPAIFPDREFN 326
           + +Y W+L AP +  +R+F+
Sbjct: 446 VFIYGWSLAAPIVLTNRDFS 465


>AE014296-2737|AAF49464.2|  465|Drosophila melanogaster CG4672-PA
           protein.
          Length = 465

 Score =  116 bits (280), Expect = 3e-26
 Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
 Frame = -2

Query: 739 FDKQRIIGLCIWVCSVLYSSIRTASASSKITMSEHILAKEGSTXXXXXXXXXXXGNEPKV 560
           FD   IIGL +W+  +LY+ I +A   SKI+       K   T           G+    
Sbjct: 328 FDTTNIIGLVVWLLCILYNCISSAVEVSKISHDNS--EKRVLTEALSDTEAGTDGSGKPS 385

Query: 559 FDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNS--QLANENIASMWVKITSSWMC 386
            D E + V YSWS FH++F  A+LYVMMTLTNW+ P+S  +L N N ASMWVKI SSW+ 
Sbjct: 386 TDTETEGVTYSWSMFHLVFVCASLYVMMTLTNWYKPHSEIELFNGNEASMWVKIVSSWLG 445

Query: 385 IGLYIWTLVAPAIFPDREFN 326
           + +Y W+L AP +  +R+F+
Sbjct: 446 VFIYGWSLAAPIVLTNRDFS 465


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,467,109
Number of Sequences: 53049
Number of extensions: 629814
Number of successful extensions: 1602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3602427675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)