Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a05r
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical ... 140 1e-33
AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical ... 139 2e-33
Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical pr... 132 4e-31
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 29 2.8
U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid tran... 29 4.9
>AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1b protein.
Length = 389
Score = 140 bits (339), Expect = 1e-33
Identities = 70/138 (50%), Positives = 92/138 (66%), Gaps = 4/138 (2%)
Frame = -2
Query: 730 QRIIGLCIWVCSVLYSSIRTASASS--KITMSEHILAKEGSTXXXXXXXXXXXGNEPKVF 557
Q I+ L +W +LY+SIR +S +S KIT + S N +V+
Sbjct: 257 QSIVSLFLWFACLLYASIRNSSNTSLGKITGGGNT-----SDEAIQLTDDAESQNSKRVY 311
Query: 556 DNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLA--NENIASMWVKITSSWMCI 383
DNE + VAYS+SFFH MFALA+LYVMMTLT+W+ P++ L+ N N+AS+WVKI SSW+C+
Sbjct: 312 DNEEEGVAYSYSFFHFMFALASLYVMMTLTSWYKPSNDLSHLNSNMASVWVKIVSSWVCV 371
Query: 382 GLYIWTLVAPAIFPDREF 329
LY WTLVAP I+PDREF
Sbjct: 372 ALYCWTLVAPIIYPDREF 389
>AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1a protein.
Length = 459
Score = 139 bits (337), Expect = 2e-33
Identities = 69/139 (49%), Positives = 93/139 (66%), Gaps = 5/139 (3%)
Frame = -2
Query: 730 QRIIGLCIWVCSVLYSSIRTASASS--KITMSEHILAKEGS-TXXXXXXXXXXXGNEPKV 560
Q I+ L +W +LY+SIR +S +S KIT + + + N +V
Sbjct: 321 QSIVSLFLWFACLLYASIRNSSNTSLGKITGGGNTSDEAIQLSSSLNGADDAESQNSKRV 380
Query: 559 FDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLA--NENIASMWVKITSSWMC 386
+DNE + VAYS+SFFH MFALA+LYVMMTLT+W+ P++ L+ N N+AS+WVKI SSW+C
Sbjct: 381 YDNEEEGVAYSYSFFHFMFALASLYVMMTLTSWYKPSNDLSHLNSNMASVWVKIVSSWVC 440
Query: 385 IGLYIWTLVAPAIFPDREF 329
+ LY WTLVAP I+PDREF
Sbjct: 441 VALYCWTLVAPIIYPDREF 459
>Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical
protein R11H6.2 protein.
Length = 442
Score = 132 bits (318), Expect = 4e-31
Identities = 71/138 (51%), Positives = 92/138 (66%), Gaps = 6/138 (4%)
Frame = -2
Query: 724 IIGLCIWVCSVLYSSIRTASASS--KIT--MSEHILAKEGSTXXXXXXXXXXXGNEPKVF 557
+I L IW+ ++Y+SIR +S +S KIT EH+ + K +
Sbjct: 319 LISLLIWLICLVYASIRNSSNTSLGKITGDNEEHVQLND--------------VEGGKAW 364
Query: 556 DNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLA--NENIASMWVKITSSWMCI 383
DNE + VAYS+SFFH MF LA+LYVMMTLT+W++P+S LA N N+AS+WVK+ SSW+C
Sbjct: 365 DNEEEGVAYSYSFFHFMFCLASLYVMMTLTSWYHPDSDLAHLNSNMASVWVKMFSSWICG 424
Query: 382 GLYIWTLVAPAIFPDREF 329
GLY WTLVAP IFPDREF
Sbjct: 425 GLYAWTLVAPIIFPDREF 442
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
protein C48B4.4c protein.
Length = 1704
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 506 HYMEEAPRVGDGVSFVVEHLRLV 574
HYM+EA R+GD V F++ H +LV
Sbjct: 735 HYMDEAERLGDWV-FIMSHGKLV 756
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
protein C48B4.4b protein.
Length = 1691
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 506 HYMEEAPRVGDGVSFVVEHLRLV 574
HYM+EA R+GD V F++ H +LV
Sbjct: 722 HYMDEAERLGDWV-FIMSHGKLV 743
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
protein C48B4.4a protein.
Length = 1689
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 506 HYMEEAPRVGDGVSFVVEHLRLV 574
HYM+EA R+GD V F++ H +LV
Sbjct: 722 HYMDEAERLGDWV-FIMSHGKLV 743
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 506 HYMEEAPRVGDGVSFVVEHLRLV 574
HYM+EA R+GD V F++ H +LV
Sbjct: 735 HYMDEAERLGDWV-FIMSHGKLV 756
>U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid
transporter protein 8 protein.
Length = 483
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 490 LYVMMTLTNWFNPNSQLANENIASMWVKITSSWMCIGLYIWTLV 359
L + +TLTN F+ N A I SM KI ++ + IG+ + ++
Sbjct: 141 LLLFLTLTNMFSLNKFAARVQIISMCSKIFATLIIIGIGFFFII 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,765
Number of Sequences: 27780
Number of extensions: 327020
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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