Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a05f
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    34   0.014
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   0.94 
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   1.6  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.8  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 418 DSTVTGLLPGNFKVDCD---EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQ 588
           +S ++ L  G  + DC    +    +AV+R++F   +F L +A I+    +       IQ
Sbjct: 67  NSKLSKLSAGYLQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQ 126

Query: 589 NGFWALNI 612
           NG W   I
Sbjct: 127 NGLWPFKI 134


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 108 ILILLNAHKNIQLQIF*ICH*TQQNSEFVTAMEL 7
           +L +LN H   QL++F +CH    NSEF   + L
Sbjct: 711 LLTILNLHDRSQLKLFEVCH----NSEFKDPINL 740


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -1

Query: 296 ELVQDGHAEQHSE---QAVLPQQHASCAAEQRPNTAPISSF 183
           +L+ D  A QH     Q  +P   AS +    P  AP+SSF
Sbjct: 174 KLLPDQSARQHQVLVGQTAIPTSEASSSINNTPLQAPVSSF 214


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 54  KSKKSATEYFYVRLIISKYRYLLLGM*IVVHKTDNTINTK*ELKTRNGCS 203
           K  K+ TE  Y+R +IS+   + L M +++HK    I+   E   RN  S
Sbjct: 404 KLYKTTTE-MYLRQVISRMPPVSLEMQVLLHKQTQLIDLLLESSLRNSLS 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,828
Number of Sequences: 5004
Number of extensions: 50855
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)