Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a05f
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) 65 5e-11
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0) 53 2e-07
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0) 51 9e-07
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_41779| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17) 31 0.99
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95) 28 7.0
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1457
Score = 64.9 bits (151), Expect = 5e-11
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 304 SRLMYALMLVLVTIVCCITLAPGLHNELQKLPF-CTNATDSTVTGLLPGNFKVDCDEAVG 480
SR Y L L + ++ ITL P + + K+P+ C T + CD VG
Sbjct: 773 SRFFYVLFLCVGNLLSFITLVPDMRYYIGKIPYLCDTVTSPRM-----------CDSLVG 821
Query: 481 YLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWALNI 612
Y A YRI FA +F+ L++++ V S+K RA I NGFW + +
Sbjct: 822 YSAAYRIYFAMTVFYFLLSILTYNVSSTKQFRARIHNGFWYIKL 865
>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 834
Score = 52.8 bits (121), Expect = 2e-07
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +1
Query: 295 STSSRLMYALMLVLVTIVCCITLAPGLHNEL-QKLPFCTNATDSTVTGLLPGNFKVDCDE 471
STS+R +Y + TI P + L FC S ++ L GN
Sbjct: 342 STSTRFVYTFFFLCGTIASSFMYLPSVRQALGHNRFFC-----SKISRL--GNCM---SH 391
Query: 472 AVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAL 606
GYLAVYRI F++L A+++ V++ DPRA IQNG W +
Sbjct: 392 DPGYLAVYRICLTMATFYILFAVVLYNVRTYADPRALIQNGLWVV 436
>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1031
Score = 50.8 bits (116), Expect = 9e-07
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = +1
Query: 487 AVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWALNI 612
++YR+ FA +F+ LMA ++IGV++ +D RA NGFW + I
Sbjct: 500 SLYRVCFAMAMFYFLMAFVLIGVRNEEDVRAKFHNGFWYIKI 541
>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 41.1 bits (92), Expect = 7e-04
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +1
Query: 298 TSSRLMYALMLVLVTIVCCITLAPGLHNE-LQKLPFCTNATDSTVTGLLPGNFKVDCDEA 474
TS +++Y L L+ T+V P L N + FC D ++ CD
Sbjct: 16 TSGKVIYLLFLMTGTLVSTFMFFPDLRNFFVVHSQFCDK--DLSLE---------KCDLL 64
Query: 475 VGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAL 606
VG++ +YRI F +FFL MA++ A ++NG W L
Sbjct: 65 VGHILLYRIYFGMFVFFLFMAVVNCQASFCMGYSALLENGLWFL 108
>SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 36.3 bits (80), Expect = 0.020
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = -1
Query: 362 KVIQHTIVTSTSISAYIRREEVELVQDGHAEQHSEQAVLPQQHASCAAE----QRPNTAP 195
K IQ T + Y R +VE + G QH QA PQQ A AA Q P+TAP
Sbjct: 26 KTIQETTKPNKRKIEYTIRVDVEFLHVGQKLQHKLQAAEPQQQARFAAHEAAVQAPSTAP 85
Query: 194 IS 189
++
Sbjct: 86 MA 87
>SB_41779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +1
Query: 514 CLFFLLMALIMIGVKSSKDPRAGIQNG 594
C FFL M +I I V SSKD R GI NG
Sbjct: 3 CFFFLFM-IITIKVSSSKDCRGGIHNG 28
>SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)
Length = 259
Score = 30.7 bits (66), Expect = 0.99
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = -1
Query: 437 SPVTVLSVAFVQNGSF*SSLCNPGAKVIQHTIVTSTSISAYIRREEVELVQDGHAEQHSE 258
+P + + +G S LC ++ +H S++ + E+ LV+DG+ +Q +E
Sbjct: 112 TPFQAIDFLVLAHGFKMSELCKQCIEIAKHI-----SLNELRKHEKYSLVEDGNGKQLAE 166
Query: 257 QAVLPQQHASCAAEQRPNT 201
+ V + EQ+PN+
Sbjct: 167 RRVELLEGKVATLEQKPNS 185
>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 605 RAQKPF*IPALGSLEDLTPIIINAISRKKRHV 510
R Q P P + SLE+L+P+ ++ I RKK+ V
Sbjct: 665 RGQPPSVRPRIQSLEELSPMAVDEIMRKKQSV 696
>SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95)
Length = 164
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 301 SSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNF 453
S+R+++ L+ +V IVC + GL+ + P N T++ + G+ G F
Sbjct: 38 SARVVFILLGWIVAIVCGLASLYGLYKNFRTHPEPFNMTENVIYGVF-GRF 87
>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1261
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 196 PFLVFNSHFVLIVLSVLCTTIYIPSNKYLY 107
PF VF+SHF + + T +YI ++Y
Sbjct: 633 PFEVFSSHFTIDLFETRSTGLYISKAGFVY 662
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,446,734
Number of Sequences: 59808
Number of extensions: 373359
Number of successful extensions: 968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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