Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a05f
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.45 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   3.2  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   3.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 242 QQHASCAAEQRPNTAPISSF*LSLCVDCVVCFMYY 138
           ++H +CA +  P  A +SS  +S  V C+V    Y
Sbjct: 179 EEHPTCALDLTPTYAVVSSS-ISFYVPCIVMLGIY 212


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 MYALMLVLVTIVCCI 357
           +Y L+ VLVTI C I
Sbjct: 3   IYILLFVLVTITCVI 17


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 MYALMLVLVTIVCCI 357
           +Y L+ VLVTI C I
Sbjct: 3   IYILLFVLVTITCVI 17


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 45  FNDKSKKSATEYFYVRLIISKYRYLLLGM 131
           + + S ++ T Y+   L +S   +L+LG+
Sbjct: 59  WRNPSMQTPTNYYLFNLAVSDLLFLILGL 87


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 593 PF*IPALGSLEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQSTLKFPGN 438
           PF +  LG+       +  A +RKK   ++     A  PT  S  T KFP N
Sbjct: 319 PFLMLPLGAGRPAFWSLRKAFARKKTDYSSFGKILATEPTLFSNVTPKFPRN 370


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 499 ITFATCLFFLLMALIMIGV 555
           ITFA+ L F+L+  I + V
Sbjct: 82  ITFASFLLFILLVQIAVAV 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,979
Number of Sequences: 438
Number of extensions: 3373
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)