Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a04r
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    31   0.23 
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    30   0.40 
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    28   1.2  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    28   1.6  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    27   3.7  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    27   3.7  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    26   6.4  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   8.5  

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 21/87 (24%), Positives = 47/87 (54%)
 Frame = +2

Query: 383 SMMSFLDLSAQNIRAAKMRVIDHTGRRASVNVSTFARRFFLAK*TLYTATGAVPNKPTR* 562
           S  S +  ++++  A+   +   TGR A++N +TF         T  T + +V + P+  
Sbjct: 191 SSASAIAAASKSAAASASALSSDTGRSATMNSTTFPTAMKSQSTTKPTLSNSV-SSPSIQ 249

Query: 563 INTSKNKANDTSPYTWNLTSPGVYSPA 643
           ++ ++N AN+++P +++   P ++ PA
Sbjct: 250 VSNNQN-ANNSTPLSFHAPIPPLHVPA 275


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 575 KNKANDTSPYTWNLTSPGVYSPATMKIIEEVHMLTS*PQGKYNVPVLYFSQWLT 736
           K +    S + WNL SPG YS  T        ML S P  +Y+V  +    WLT
Sbjct: 227 KKQCERPSYHPWNLLSPGAYSIIT-------GMLRSDPFKRYSVKHVVQHPWLT 273


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 478 DINGSPTPGVVNDPHLSRPY 419
           D NG+P PG + + H++ PY
Sbjct: 706 DRNGNPLPGTIIEKHVTHPY 725


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 684 YDVSMWTSSMIFIVAGLYTPGLVKFHVYGD-VSFALF-FEVLIHLVGLLGTAPVAVYNV 514
           +  S+WT++++ I+ GLY    + FH  G+   F  F  +   +  GLLG A    + +
Sbjct: 4   FSTSLWTTTVMSIIVGLY----MLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGI 58


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 19  HLEKYYTYFNNISNKIIVKKFPL 87
           H +K Y YFNNI+   + K++PL
Sbjct: 146 HRDKSYRYFNNINR--LAKEYPL 166


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 46  NNISNKIIVKKFPLFLFLF 102
           +N+SNK ++  +PLFLF F
Sbjct: 199 SNLSNKKLLAVYPLFLFYF 217


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 687 GYDVSMWTSSMIFIVAGL--YTPGLVKFHVYGDVSFALFFEVLIHLVGLLGTAPVAVYNV 514
           G + S +TS ++ +  GL    P LVK++VY  ++F  F + L      L    ++ Y V
Sbjct: 278 GLEQSAYTSFLLVLCFGLGITKPALVKYYVY--LAFVAFVQGLFVTFAPLSYPVMSFYGV 335


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -3

Query: 681 DVSMWTSSMIFIVAGLYTPGLVKFHVYGDVSFALFFEVLIH 559
           + S+WT++      G Y PG+  +H +      L   ++ H
Sbjct: 332 EFSIWTATECNNDCGYYLPGIPAYHGFSGAKLVLMEFIMPH 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,187
Number of Sequences: 5004
Number of extensions: 68371
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)