Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a04r
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.2  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 701 CIYPGAMTSACGLLR*SSS-WQGCTLPD*LSSTCMETYRSLCFSKC 567
           C Y  AM+SACG+++ +    + C  P      C E  +  C +KC
Sbjct: 46  CKYGIAMSSACGIVQCAKGPDELCGGPQNYLGICAEGMQCSC-NKC 90


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 302 RVNAASLSIGCSGLCLPEL*RHCTNQSTN 216
           R+ AAS+++ C  LC+ +L     + STN
Sbjct: 283 RMIAASVNLICHILCMSDLHWQLPHNSTN 311


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 410 AQNIRAAKMRVIDHTGRRASVN 475
           AQNI  AK  +ID+     S+N
Sbjct: 418 AQNIDHAKNTIIDYRNNDLSIN 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,452
Number of Sequences: 438
Number of extensions: 4986
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)