Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a04f
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0723 - 5287864-5287885,5287971-5288043,5288521-5288626,528... 58 4e-09
02_01_0145 + 1040798-1040934,1041152-1041194,1041999-1042076,104... 41 7e-04
06_02_0233 + 13315579-13316046 30 1.8
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080... 28 7.1
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 28 7.1
12_01_0132 - 990833-991287,991470-991593,991987-991991,992628-99... 27 9.4
11_01_0121 - 948450-948904,949073-949224,949389-949449,950201-95... 27 9.4
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084... 27 9.4
01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836... 27 9.4
>06_01_0723 -
5287864-5287885,5287971-5288043,5288521-5288626,
5288829-5288891,5290165-5290249,5290337-5290377,
5291260-5291323,5291647-5291716,5291886-5291960,
5292070-5292164,5293671-5293771,5293852-5293874,
5293956-5294031,5294229-5294322,5294493-5294548,
5296204-5296327,5296607-5296743
Length = 434
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/42 (59%), Positives = 29/42 (69%)
Frame = +3
Query: 507 PNWALMACGVLLFLAYNLDGIDGKQARKLGVSGPLGELFDHG 632
P W +A G+LLFL D +DGKQAR+ S PLGELFDHG
Sbjct: 122 PRWVHLAHGLLLFLYQTFDAVDGKQARRTSSSSPLGELFDHG 163
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 252 YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWI 380
Y+ + + LK+Y+YS D S ++ YV+ P W+ P W+
Sbjct: 3 YIGAHGVETLKRYRYSGQDHSVVAKYVLQPFWSRCVTLFPLWM 45
>02_01_0145 +
1040798-1040934,1041152-1041194,1041999-1042076,
1042444-1042544,1042900-1042994,1043161-1043229,
1043432-1043501,1043757-1043820,1043907-1043947,
1044098-1044182,1044608-1044682
Length = 285
Score = 41.1 bits (92), Expect = 7e-04
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 252 YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLIT 398
Y+ Q+ L++YKYS +D S ++ Y++ P W+ P W + I+
Sbjct: 3 YVGQHGVATLRRYKYSGVDHSLVAKYILQPFWSRFVNLFPLWFPDSSIS 51
>06_02_0233 + 13315579-13316046
Length = 155
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 554 QSRWYRRKASSEAWRVRPAGRTLRSR 631
+SRW RR A E R RPA R RSR
Sbjct: 87 RSRWQRRPARRERRRWRPAWRERRSR 112
>11_06_0109 +
20202629-20205452,20206354-20206578,20207208-20208091,
20208692-20208814
Length = 1351
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 246 YKYLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVC 416
Y LS N+ DG+ K+ A S S Y+ + S + P+W+ P + +A F C
Sbjct: 468 YLDLSFNNLDGVITEKHFAHLASLESIYLPYNSLEIVVD--PEWLPPFRLKYAYFYC 522
>05_03_0460 - 14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = -2
Query: 427 TITIQTKP-ANVIKFGAIHFGINLVIKFQLGCIT*LLSGLVSMALYLYFLSPSKWF*DKY 251
++ + T P A+ F A + G+N V+ G + +L GL + + + LS ++W +
Sbjct: 826 SLLLSTCPSASCNYFPAAYTGVNSVVP---GNLLQILEGLEARGNWRWALSVTEWVYKEN 882
Query: 250 LYSKSFSMVVIRFLQILT 197
+Y S + FLQ L+
Sbjct: 883 IYEHGKSRYICDFLQELS 900
>12_01_0132 -
990833-991287,991470-991593,991987-991991,992628-992763,
993417-993751,994912-994966
Length = 369
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 246 YK-YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMV 422
YK Y+ +N GLK A+ + H W RF+ + PNL+ G+ C
Sbjct: 96 YKGYIDENVRVGLKSLPV-AVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCED 154
Query: 423 IVILLLTIFDYDFHGA 470
LL ++++ F G+
Sbjct: 155 DHRLL--VYEFMFRGS 168
>11_01_0121 -
948450-948904,949073-949224,949389-949449,950201-950336,
951042-951376,952523-952577
Length = 397
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 246 YK-YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMV 422
YK Y+ +N GLK A+ + H W RF+ + PNL+ G+ C
Sbjct: 96 YKGYIDENVRVGLKSLPV-AVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCED 154
Query: 423 IVILLLTIFDYDFHGA 470
LL ++++ F G+
Sbjct: 155 DHRLL--VYEFMFRGS 168
>02_04_0415 +
22706964-22707072,22707784-22708077,22708304-22708416,
22708504-22709002,22709106-22709144,22709228-22709515,
22709766-22709905,22710468-22710960,22711082-22711356
Length = 749
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = -2
Query: 307 SMALYLYFLSPSKWF*DKYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVT 128
++++ Y LS SK + Y+ S + FL L+ +K ++FR N+L T
Sbjct: 181 NLSMRSYILSVSKQYIADYISSPE-----VNFLTSLSGRVNKKTKLVFRLLNELAVEPST 235
Query: 127 FDLNTSLYANLTFFR 83
S+ NLTF +
Sbjct: 236 NQTYGSMLKNLTFIK 250
>01_06_0971 -
33483015-33483071,33483282-33483315,33483590-33483684,
33483769-33483843,33483925-33484010,33484256-33484307,
33484381-33484455,33484554-33484620,33485699-33486159
Length = 333
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 504 IPNWALMACGVLLFLAYNLDGIDGKQARKLGVSGPLGELFD 626
+ W L A G L L+ D +DG ARK+G++ G D
Sbjct: 157 VNEWYLPAFGTLA-LSGASDWLDGFLARKMGINSVFGSYLD 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,992,727
Number of Sequences: 37544
Number of extensions: 320493
Number of successful extensions: 784
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -