Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a04f
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical ... 119 2e-27
Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical pr... 103 1e-22
Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical p... 103 1e-22
Z77662-16|CAJ90504.1| 424|Caenorhabditis elegans Hypothetical p... 87 1e-17
AL033512-5|CAA22073.2| 424|Caenorhabditis elegans Hypothetical ... 87 1e-17
U41544-3|AAA83185.3| 439|Caenorhabditis elegans Gex interacting... 31 0.91
AC006661-9|AAF39885.1| 337|Caenorhabditis elegans Hypothetical ... 31 0.91
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z80215-11|CAI70398.1| 181|Caenorhabditis elegans Hypothetical p... 29 3.7
AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine r... 28 4.9
Z83234-2|CAB70170.2| 715|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr... 27 8.5
U39655-1|AAA80408.1| 395|Caenorhabditis elegans Hypothetical pr... 27 8.5
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 8.5
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 8.5
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 8.5
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 8.5
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 8.5
AF016435-6|AAB65882.1| 213|Caenorhabditis elegans Hypothetical ... 27 8.5
>AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical
protein F54D7.2 protein.
Length = 393
Score = 119 bits (286), Expect = 2e-27
Identities = 56/131 (42%), Positives = 74/131 (56%)
Frame = +3
Query: 243 EYKYLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMV 422
EY+YL H G YKY+ +D SPLS YV HP WN++ F P+ PN++T G+ ++
Sbjct: 12 EYEYLQPEHLKGFDSYKYNCVDNSPLSVYVSHPFWNWLVVFYPRTWVPNVLTLVGWGFVM 71
Query: 423 IVILLLTIFDYDFHGAERLRQGVDEYRIPNWALMACGVLLFLAYNLDGIDGKQARKLGVS 602
+ DY +R G IP+W A FL + LDG DGKQ+R++G S
Sbjct: 72 AGFFIEAYLDYSI---DRNSDG-STNPIPDWFWFAAAACTFLGHTLDGTDGKQSRRIGAS 127
Query: 603 GPLGELFDHGL 635
GP GELFDHGL
Sbjct: 128 GPTGELFDHGL 138
>Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 103 bits (247), Expect = 1e-22
Identities = 56/126 (44%), Positives = 69/126 (54%)
Frame = +3
Query: 255 LSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVIL 434
LS LK++KYSA+D S L M W F+ P WIAPNLIT+ G V +I +L
Sbjct: 23 LSDQELKRLKEHKYSAVDNSWLDELCMKRWWEFVITLCPMWIAPNLITWIGLVINLITVL 82
Query: 435 LLTIFDYDFHGAERLRQGVDEYRIPNWALMACGVLLFLAYNLDGIDGKQARKLGVSGPLG 614
+L+ F Y E P+WA + + LF LD IDGKQAR+ G S PLG
Sbjct: 83 VLSSFSYS--ATE---------SAPSWAYLQAALGLFFYQTLDAIDGKQARRTGSSSPLG 131
Query: 615 ELFDHG 632
ELFDHG
Sbjct: 132 ELFDHG 137
>Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 103 bits (247), Expect = 1e-22
Identities = 56/126 (44%), Positives = 69/126 (54%)
Frame = +3
Query: 255 LSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVIL 434
LS LK++KYSA+D S L M W F+ P WIAPNLIT+ G V +I +L
Sbjct: 23 LSDQELKRLKEHKYSAVDNSWLDELCMKRWWEFVITLCPMWIAPNLITWIGLVINLITVL 82
Query: 435 LLTIFDYDFHGAERLRQGVDEYRIPNWALMACGVLLFLAYNLDGIDGKQARKLGVSGPLG 614
+L+ F Y E P+WA + + LF LD IDGKQAR+ G S PLG
Sbjct: 83 VLSSFSYS--ATE---------SAPSWAYLQAALGLFFYQTLDAIDGKQARRTGSSSPLG 131
Query: 615 ELFDHG 632
ELFDHG
Sbjct: 132 ELFDHG 137
>Z77662-16|CAJ90504.1| 424|Caenorhabditis elegans Hypothetical
protein Y49A3A.1 protein.
Length = 424
Score = 87.0 bits (206), Expect = 1e-17
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Frame = +3
Query: 225 TMEKLFEYK-YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITF 401
T++ +Y L++ L ++ YSA+DTS L M W + + P W+APNL+T
Sbjct: 42 TIDHYLQYDCLLTREELHRLDEHVYSAVDTSWLDELCMKKFWEAVVLYYPLWVAPNLLTL 101
Query: 402 AGFVCMVIVILLLTIFDYDFHGAERLRQGVDEYRIPNWALMACGVLLFLAYNLDGIDGKQ 581
G + + +L+L+ Y E P WA LF+ LD DGKQ
Sbjct: 102 IGLIVNLTTVLVLSF--YCPTATETA---------PAWAYFLAAFGLFVYQTLDATDGKQ 150
Query: 582 ARKLGVSGPLGELFDHG 632
AR++G S PLGELFDHG
Sbjct: 151 ARRIGASSPLGELFDHG 167
>AL033512-5|CAA22073.2| 424|Caenorhabditis elegans Hypothetical
protein Y49A3A.1 protein.
Length = 424
Score = 87.0 bits (206), Expect = 1e-17
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Frame = +3
Query: 225 TMEKLFEYK-YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITF 401
T++ +Y L++ L ++ YSA+DTS L M W + + P W+APNL+T
Sbjct: 42 TIDHYLQYDCLLTREELHRLDEHVYSAVDTSWLDELCMKKFWEAVVLYYPLWVAPNLLTL 101
Query: 402 AGFVCMVIVILLLTIFDYDFHGAERLRQGVDEYRIPNWALMACGVLLFLAYNLDGIDGKQ 581
G + + +L+L+ Y E P WA LF+ LD DGKQ
Sbjct: 102 IGLIVNLTTVLVLSF--YCPTATETA---------PAWAYFLAAFGLFVYQTLDATDGKQ 150
Query: 582 ARKLGVSGPLGELFDHG 632
AR++G S PLGELFDHG
Sbjct: 151 ARRIGASSPLGELFDHG 167
>U41544-3|AAA83185.3| 439|Caenorhabditis elegans Gex interacting
protein protein 15 protein.
Length = 439
Score = 30.7 bits (66), Expect = 0.91
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -1
Query: 203 PDKTPRSKDAGNISK*KQIIIFVRHIRFEHFTLR*FNIFPNLNITILYRNDNFIYRTR 30
P P + D GN + + RH++F HF L+ + FP++ +++L D F TR
Sbjct: 199 PAPAPPANDFGNYQP--KSALSSRHLKFSHFLLQCY-FFPSVFLSLLSVTDPFPATTR 253
>AC006661-9|AAF39885.1| 337|Caenorhabditis elegans Hypothetical
protein H20J04.7 protein.
Length = 337
Score = 30.7 bits (66), Expect = 0.91
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = -2
Query: 244 SKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKL-LFSFVTFDLNTSLYANLTFFRI*TLL 68
S S ++++ L++L + M++ KN L L F F T + +++ FR+ L+
Sbjct: 36 SYSIKIILLLVLEVLNVMVQSFMVIFILKKNCLKLTPFFAF---TVVRSSMIIFRVSFLI 92
Query: 67 FCIVMIILFTEHAL 26
F I+M+ + +E +L
Sbjct: 93 FAIIMLEMTSESSL 106
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +3
Query: 279 LKKYKYSAIDTSPLS--NYVMHPSWNFITRFIPKWIAPN--LITFAGFVCMVIVILLLTI 446
L K S+ID + +Y+ S N + P W APN FA C+ + L+++
Sbjct: 518 LSKLLSSSIDNEECTFPSYMCKLSMNLHSDLYPPWYAPNDVFTNFAILFCLSLTFLVISF 577
Query: 447 F 449
F
Sbjct: 578 F 578
>Z80215-11|CAI70398.1| 181|Caenorhabditis elegans Hypothetical
protein C36B1.13 protein.
Length = 181
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 429 ILLLTIFDYDFHGAERLRQGVDEYRIPNWALMACGVLL 542
ILLL FD G L +YRIP W + G+L+
Sbjct: 24 ILLLVPFDLLIVGVVNLDSCEADYRIPIWMISMAGLLI 61
>AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine
receptor, class z protein5 protein.
Length = 351
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 381 APNLITFAGFVCMVIVILLLTIFDYDFHG 467
AP ++ F +C+++VILLL +F+ F+G
Sbjct: 57 APIIVHFHRLICVMLVILLLCLFEM-FYG 84
>Z83234-2|CAB70170.2| 715|Caenorhabditis elegans Hypothetical
protein K09E4.4 protein.
Length = 715
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 252 YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFV 413
YL+ + LK Y D L+++ + + I R + I P L TFAGFV
Sbjct: 204 YLAWHRMGNLKAYGGGLSDAQMLNDHNL--AKRIIDRLLELGITPILPTFAGFV 255
>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical
protein AC3.5 protein.
Length = 1090
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 273 DGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKW 377
+GLK+YKY + S + PS++++ P +
Sbjct: 309 NGLKEYKYKNSEGKEQSMFTTQPSYSYLRHVFPSF 343
>U39655-1|AAA80408.1| 395|Caenorhabditis elegans Hypothetical
protein C46F4.1 protein.
Length = 395
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +1
Query: 229 WKNSSSINICLKTILTGLRNISTAPSTQARLA--TMLCIRV 345
WK + NIC + R ++T P T L +LC+ V
Sbjct: 252 WKRTQGANICTNSERKAKRKLTTRPRTTRMLVIILLLCVMV 292
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = -2
Query: 256 KYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFF 86
K+ Y+ + +V++RF I +R KML++ ++ F +F + T+L+ + F+
Sbjct: 1302 KFTYTFGYLVVILRFFTIASRNSTLKMLML----TVIMSMFRSFFIITALFLLVLFY 1354
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = -2
Query: 256 KYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFF 86
K+ Y+ + +V++RF I +R KML++ ++ F +F + T+L+ + F+
Sbjct: 1336 KFTYTFGYLVVILRFFTIASRNSTLKMLML----TVIMSMFRSFFIITALFLLVLFY 1388
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = -2
Query: 256 KYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFF 86
K+ Y+ + +V++RF I +R KML++ ++ F +F + T+L+ + F+
Sbjct: 1394 KFTYTFGYLVVILRFFTIASRNSTLKMLML----TVIMSMFRSFFIITALFLLVLFY 1446
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = -2
Query: 256 KYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFF 86
K+ Y+ + +V++RF I +R KML++ ++ F +F + T+L+ + F+
Sbjct: 1447 KFTYTFGYLVVILRFFTIASRNSTLKMLML----TVIMSMFRSFFIITALFLLVLFY 1499
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = -2
Query: 256 KYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFF 86
K+ Y+ + +V++RF I +R KML++ ++ F +F + T+L+ + F+
Sbjct: 1366 KFTYTFGYLVVILRFFTIASRNSTLKMLML----TVIMSMFRSFFIITALFLLVLFY 1418
>AF016435-6|AAB65882.1| 213|Caenorhabditis elegans Hypothetical
protein F59D6.7 protein.
Length = 213
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -2
Query: 244 SKSFSMVVIRFLQILTRLQGQKML---VIFRNKNKLLFSFVTFDLNTSLYANLTFFRI 80
SKS + +F++IL Q + + K+KL F+F +DLN + Y F++
Sbjct: 98 SKSGQLTFRQFVRILAHFQPISKVKDNALNSRKDKLRFAFKMYDLNKNNYITREEFKV 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,228,383
Number of Sequences: 27780
Number of extensions: 302324
Number of successful extensions: 762
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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