Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a02f
         (556 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.58 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.5  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 129 GEGGLRGLMHVDRRGGGMLLNCCCGETPGLVAGDRLSTSSAATYYW 266
           G+G  R ++ V+R+  G  +  C G+   +   + LS S + T +W
Sbjct: 91  GDGNKRSIIVVNRKMPGPSVEVCLGDEVIIDVVNHLS-SDSTTIHW 135


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 505 CISSSHPI*HMSLVKRVHPIN*YFAFLLINNIKR 404
           C    +PI  +S +K  HPI+   A L I ++++
Sbjct: 349 CNFEGNPIKTISWLKDGHPIDHNEAVLRIESVRK 382


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 361 YYFRFSFLY*TVH 323
           YYF ++F+  TVH
Sbjct: 114 YYFYYAFIIFTVH 126



 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 361 YYFRFSFLY*TVH 323
           YYF ++F+  TVH
Sbjct: 239 YYFYYAFILFTVH 251


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 235 SLSPATSPGVSPQQQF 188
           S+SPA+ P +SP   F
Sbjct: 195 SVSPASLPSISPSGGF 210


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 267 SSNTSQLNLCSVCHQRQAPASRHNNNSIAFHHH 169
           SS+ S +  C VC Q  +     +N+ +   H+
Sbjct: 541 SSHVSAVLTCKVCDQAFSSLKELSNHMVKNSHY 573


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 235 SLSPATSPGVSPQQ 194
           SL+P  SPG  P Q
Sbjct: 383 SLTPLASPGCGPGQ 396


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 235 SLSPATSPGVSPQQ 194
           SL+P  SPG  P Q
Sbjct: 383 SLTPLASPGCGPGQ 396


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,810
Number of Sequences: 336
Number of extensions: 2108
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)