Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a02f
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    28   1.1  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   3.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.2  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   7.5  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   7.5  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   9.9  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 190 FNSIPPPRRSTCIRPRNPPSP 128
           F+SI PP  S    PRN P+P
Sbjct: 250 FSSIEPPASSASTSPRNTPTP 270


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 232 LSPAT-SPGVSPQQQFNSIPPPRRSTCIRPRNPPSP 128
           ++PA  +P  +P  + +  PPP RS+ I P  PP+P
Sbjct: 727 VTPAPPTPAPTPAVKHHPPPPPVRSS-ISPSMPPAP 761


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 149 TSQPPLPPPQRRATLPRL 96
           TS+PPLPPP  R +   L
Sbjct: 287 TSKPPLPPPSSRVSAAAL 304


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 229 SPATSPGVSPQQQFNSIPPPRRSTCIRPR 143
           SP T+P   P +    +P P+R + +  R
Sbjct: 47  SPVTAPAAQPVESSVPLPLPKRKSSVEKR 75


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 255 SQLNLCSVCHQRQAPASRHNNNSIAFHH 172
           S+LN+ S+C++  +  +  +N+ IA H+
Sbjct: 481 SELNIASICYEISSGLAFLHNSGIAHHN 508


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 517 CLMCDKLINICYG 555
           C   DKLI++CYG
Sbjct: 327 CFTLDKLISLCYG 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,120
Number of Sequences: 5004
Number of extensions: 32382
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)