Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a02f
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        31   0.48 
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_26305| Best HMM Match : Integrase_Zn (HMM E-Value=9.6)              30   1.1  
SB_31339| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021)                 29   2.6  
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)                  29   3.4  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               28   5.9  
SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)                 27   7.8  
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)                        27   7.8  

>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = -1

Query: 220 TSPGVSPQQQFNSIPPPRRSTCIRPRNPPSPRHRDARPYR 101
           TSP        N  PPPRR +    R  PSPR R   P R
Sbjct: 546 TSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585



 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 223 ATSPGVSPQQQFNSIPPPRRSTCIRPRNPPSPRHR 119
           A++P    +++ NS+ PPRRS   R  N  SP  R
Sbjct: 288 ASAPRSRGKREENSVSPPRRSKGRREENSVSPPRR 322



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = -1

Query: 223 ATSPGVSP------QQQFNSIPPPRRSTCIRPRNPPS-PRHRDAR 110
           ++SP VSP      +++ NS+ PPRRS   R  N  S PR R  R
Sbjct: 253 SSSPSVSPPRRSKGRREENSVSPPRRSKGKREDNSASAPRSRGKR 297


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 235 SLSPATSPGVSPQQQFNSIPPPRRSTCIRPRNPPSPRHRDARPY 104
           +L P   P  +PQQ      PP +S   RP  PPS +  + RP+
Sbjct: 53  ALQPLKPPSNTPQQLTT---PPHQSNTPRPLTPPSRQSNNPRPH 93


>SB_26305| Best HMM Match : Integrase_Zn (HMM E-Value=9.6)
          Length = 222

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 229 SPATSPGVSPQQQFNSIPPPRRSTCIRPRNPPSPRHRDARP 107
           SP T+    PQ Q N    PR   C RPR  PS + + ++P
Sbjct: 63  SPKTNTS-KPQDQVNQAASPRDKQCARPRQ-PSRKTKASKP 101


>SB_31339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -1

Query: 241 VLSLSPATSPGVSPQQQFNSIPPPRRSTCIRPRNPPSPRHRDARPYRDFIGG*TLC 74
           ++ +S  + PGV   + +  +P  R S+ +   N P P+ +  + Y  + G  T C
Sbjct: 1   MVRVSRRSKPGVCCLRLYGMVPMRRSSSFVSTENAPGPKRKPFQDYYLYSGHTTEC 56


>SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021)
          Length = 397

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 217 SPGVSPQQQFNSIPPPRRSTCIRPRNP-PSPR 125
           +P ++PQ + N++PPP  +T   P NP P P+
Sbjct: 231 TPYINPQNKLNTLPPPNETT-RDPVNPNPVPK 261


>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 217  SPGVSPQQQFNSIPPPRRSTCIRPRNP-PSPR 125
            +P ++PQ + N++PPP  +T   P NP P P+
Sbjct: 968  TPYINPQNKLNTLPPPNETT-RDPVNPNPVPK 998


>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
          Length = 264

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 202 PQQQFNSIPPPRRSTCIRPRNPPSPR--HRDARPYR 101
           P +    + PPR     RP+ PP P+  HR   P+R
Sbjct: 92  PLEPHRPLEPPRPQEPHRPQEPPRPQEPHRPQEPHR 127



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -1

Query: 202 PQQQFNSIPPPRRSTCIRPRNPPS--PRHRDARPYR 101
           PQ+    + PPR     RP+ PP     HR   P+R
Sbjct: 200 PQEPHRPLEPPRPQEQHRPQEPPKTLEPHRPQEPHR 235


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 229  SPATSPGVSPQQQFNSIPPPRRSTCIRPRNPPSPRHRDARP 107
            SP+ SP   P  + + +PPP+R     P +P   R + A P
Sbjct: 937  SPSNSP---PPMRSSPLPPPQRKRASTPPSPRRARRKVASP 974


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = -1

Query: 232 LSPATSPGVSPQQQFNSIPPPRRSTCIRPRNPPSPRHRDARP 107
           +S  TS   SP Q     PPP R     P  PP P     RP
Sbjct: 188 ISIGTSHPTSPSQITQPPPPPPRPPPSPPPPPPPPSPSPPRP 229


>SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)
          Length = 399

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -1

Query: 229 SPATSPGVSPQQQFNSIPPPRRSTCIRPRNPPSPRHRDARP 107
           +PA  P   P  +     P    +  RP  PPSP  R  +P
Sbjct: 218 APAPPPRPCPAPRVRKTIPSSTDSLPRPGRPPSPSTRGMKP 258


>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
          Length = 184

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 250 AELVLSLSPATSPGVSPQQQFNSIPPPRRSTCIRPRNPPSPR 125
           A+ +  L P   P   PQ    S P PRR     P  PP+PR
Sbjct: 128 AKRIRRLLPTPPPPTPPQ----STPKPRRVLPTPPPKPPTPR 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,747,693
Number of Sequences: 59808
Number of extensions: 246159
Number of successful extensions: 939
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)