Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p18f
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    99   6e-22
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    85   6e-18
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    38   0.001
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    32   0.077
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    28   1.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   1.3  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    27   2.9  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    26   3.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   5.1  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   6.7  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   6.7  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.8  

>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 98.7 bits (235), Expect = 6e-22
 Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 1/159 (0%)
 Frame = +2

Query: 146 TIAIHAGQEPEKWNSAAVVTPIVTSTTFKQPAPAEHTG-FEYGRSGNPTRNTLEECLAAL 322
           T  +H     +++++++V  PI  S TFKQP   EH G F+Y RSGNPTR+ L+  LA L
Sbjct: 11  TELVHVEGNEDQYHASSV--PIYQSATFKQPC-LEHMGKFDYTRSGNPTRSVLQVHLAKL 67

Query: 323 DGGKYGLTFASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQVIARLGINTTFTDFT 502
              K+    ++                H+V+  D+YGG++RLL     + G      D +
Sbjct: 68  MKAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTS 127

Query: 503 NIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIAR 619
           ++   + A++ +T ++ IE+PTNP + + DI AIVKI R
Sbjct: 128 DLAAFEAALRPDTNLVLIESPTNPRISICDIRAIVKITR 166


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
 Frame = +2

Query: 140 FATIAIHAGQEPEKWNSAAVVTPIVTSTTFK--------QPAPAEHTGFEYGRSGNPTRN 295
           F T+ +HAGQEP+   S+  V PI  +T++         +    +  G+ Y R  NPT +
Sbjct: 8   FETLQLHAGQEPDAATSSRAV-PIYATTSYVFRDCDHGGRLFGLQEPGYIYSRMMNPTAD 66

Query: 296 TLEECLAALDGGKYGL-TFASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQVIARL 472
             E+ +AAL+ G   + T +               GD+IVS+  +YGGT  L +  + RL
Sbjct: 67  VFEKRIAALEHGAAAIATSSGTSALFMALTTLAKAGDNIVSTSYLYGGTYNLFKVTLPRL 126

Query: 473 GINTTFTDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIA 616
           GI T F +  +   +   + ENTK +++E+  NP+  V D E I ++A
Sbjct: 127 GITTKFVNGDDPNDLAAQIDENTKAVYVESIGNPMYNVPDFERIAEVA 174


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +2

Query: 503 NIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIA 616
           ++ K++NA+ E TKMI I TP NPL K+   E + +IA
Sbjct: 166 DMNKLRNAITEKTKMIVINTPHNPLGKIFSEEELNEIA 203


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 31.9 bits (69), Expect = 0.077
 Identities = 20/64 (31%), Positives = 35/64 (54%)
 Frame = +2

Query: 428 YGGTNRLLRQVIARLGINTTFTDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIV 607
           Y GT +++ ++    G+ T+F     I+   +A+ E   +IW+ETP NPL    DI    
Sbjct: 121 YSGTIQIIARINRLTGLETSF-----IDGKCDAIGEGD-VIWLETPLNPLGIAFDIPFYK 174

Query: 608 KIAR 619
           ++A+
Sbjct: 175 ELAK 178


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 465 AITCLNSLFVPPYTSSED 412
           A TC N L +PPYTS +D
Sbjct: 732 AHTCFNRLDLPPYTSKKD 749


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 482 TTFTDFTNIEKVKNAMQENTKMIWIETPTNPLLKVV 589
           T + D  N EK    + +NT+   ++T  NPLL ++
Sbjct: 22  TIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLI 57


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 534  SCMAFFTFSIFVKSVNVVLIPNLAITCLNSLFVP 433
            +C  F  + + V ++ + L+P  +  CL  LF P
Sbjct: 1277 TCQTFGFWCVTVLTIALCLLPRFSYICLQKLFYP 1310


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 465 AITCLNSLFVPPYTSSED 412
           A TC N L +PPY S E+
Sbjct: 636 AHTCFNRLDIPPYNSKEE 653


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 422 DVYGGTNRLLRQVIARLGINTT 487
           DVY   NRL  QVIA +G + T
Sbjct: 144 DVYSADNRLAEQVIASVGDDCT 165


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 197 VVTPIVTSTTFKQPAPAEHTGFEYGRSGNPTRNTLEECLAALDGGKYGLTF 349
           V + ++  TTF Q  P+    +E     N T N L E   +L    YG  F
Sbjct: 479 VSSELLHMTTFTQSLPSGFKAYEIIPEPNVTGNALIELQESLHLDSYGFFF 529


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 165 AKNRKNGIQQPWLHPLSHPLHSNSQH 242
           +KN +N  Q P  +P  H +   SQH
Sbjct: 16  SKNSQNASQPPETYPFYHEVRQMSQH 41


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 476 INTTF-TDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIE 598
           +N  F T F+ ++  K   Q+ TK IW+    N  + V+D+E
Sbjct: 56  LNNLFGTSFSVMDASKR--QQTTKGIWLSKANNSPILVMDVE 95


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 297  VFLVGFPERPYSKPVCSAGAGCLNV 223
            V  VGF E PY   + S G   LNV
Sbjct: 1231 VTFVGFAEEPYRMTLFSKGQEALNV 1255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,283
Number of Sequences: 5004
Number of extensions: 57840
Number of successful extensions: 197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)