Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p18f
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83106-5|CAB05492.1|  392|Caenorhabditis elegans Hypothetical pr...   171   3e-43
U58758-12|AAB93432.1|  392|Caenorhabditis elegans Hypothetical p...   164   4e-41
Z81467-4|CAB03873.2|  451|Caenorhabditis elegans Hypothetical pr...    69   2e-12
Z81467-5|CAN86602.1|  172|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z78542-10|CAB01751.2|  428|Caenorhabditis elegans Hypothetical p...    30   1.5  
AL031620-6|CAA20929.2|  428|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z46791-6|CAA86759.1|  395|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z78417-2|CAB01692.1|  258|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF100663-3|AAC68980.1|  529|Caenorhabditis elegans Udp-glucurono...    28   6.2  
U64599-5|AAM69110.1|  303|Caenorhabditis elegans Unidentified vi...    27   8.2  

>Z83106-5|CAB05492.1|  392|Caenorhabditis elegans Hypothetical
           protein F22B8.6 protein.
          Length = 392

 Score =  171 bits (416), Expect = 3e-43
 Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
 Frame = +2

Query: 134 PGFATIAIHAGQEPEKWNSAAVVTPIVTSTTFKQPAPAEHTGFEYGRSGNPTRNTLEECL 313
           P F T A+H GQEPE+W+   VV PI  STT+KQ  P E   ++Y R GNPTR+ L++ L
Sbjct: 5   PHFGTDAVHVGQEPEQWDINQVVPPISMSTTYKQDNPGEPKRYDYARGGNPTRDVLQKNL 64

Query: 314 AALDGGKYGLTFASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQV-IARLGINTTF 490
           AAL+G K+   F+S            NHGDHIV SDDVYGGT R +RQ+ + + G+    
Sbjct: 65  AALEGAKHCQAFSSGLAASSAVINLLNHGDHIVCSDDVYGGTIRYIRQIAVKKYGMEVDS 124

Query: 491 TDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIAR 619
            D T+++ ++ A++ NTKM+W E+P+NPLLKVVDI A+V+ A+
Sbjct: 125 VDLTDVQNLEKAIKPNTKMVWFESPSNPLLKVVDIAAVVQTAK 167


>U58758-12|AAB93432.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK1127.10 protein.
          Length = 392

 Score =  164 bits (399), Expect = 4e-41
 Identities = 77/163 (47%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
 Frame = +2

Query: 134 PGFATIAIHAGQEPEKWNSAAVVTPIVTSTTFKQPAPAEHTGFEYGRSGNPTRNTLEECL 313
           P F T AIH GQEPE+W+   VV PI  S+T+KQ  P E  G +Y R+GNPTR+ L++ L
Sbjct: 5   PHFGTAAIHVGQEPEQWDMNQVVPPISLSSTYKQDNPGEPKGHDYSRAGNPTRDVLQKNL 64

Query: 314 AALDGGKYGLTFASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQV-IARLGINTTF 490
           AAL+  K+   F+S             +GDHIV SDDVYGGT R +R+V +   G+    
Sbjct: 65  AALEDAKHCQVFSSGLAATSAIINLLKYGDHIVCSDDVYGGTQRYIRRVAVPNHGLEVDS 124

Query: 491 TDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIAR 619
            D T+++ ++ A++ NTKM+W E+P+NPLLKVVDI A+V+ A+
Sbjct: 125 VDLTDVQNLEKAIKPNTKMVWFESPSNPLLKVVDIAAVVQTAK 167


>Z81467-4|CAB03873.2|  451|Caenorhabditis elegans Hypothetical
           protein C12C8.2a protein.
          Length = 451

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
 Frame = +2

Query: 185 NSAAVVTPIVTSTTFK-----QPAPAEH-TGFEYGRSGNPTRNTLEECLAALDGGKYGLT 346
           N+  VV PI  S+T++     Q     H   F Y R GNPT   +E  +  ++GG   L 
Sbjct: 78  NADPVVVPIYHSSTYRFKTVDQFNEDNHGANFVYRRCGNPTTENVEVVINEIEGGAGSLL 137

Query: 347 FASXXXXXXXXXXXX-NHGDHIVSSDDVYGGTNRLLRQVIARLGINTTFTDFTNIEK--- 514
           + S             + G H++  + +Y GT+  + + +AR G+  T  D    +    
Sbjct: 138 YNSGLAAISAVFLEFLSSGAHMIVMNPIYSGTSSFINETLARFGVEITSVDVEKEKDFAG 197

Query: 515 -VKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIAR 619
            V+ A++ NTKMI+ E+  NP + V DI   +++A+
Sbjct: 198 AVEKAIRPNTKMIYFESIANPTMAVPDILGTIEVAK 233


>Z81467-5|CAN86602.1|  172|Caenorhabditis elegans Hypothetical
           protein C12C8.2b protein.
          Length = 172

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +2

Query: 185 NSAAVVTPIVTSTTFK-----QPAPAEH-TGFEYGRSGNPTRNTLEECLAALDGGKYGLT 346
           N+  VV PI  S+T++     Q     H   F Y R GNPT   +E  +  ++GG   L 
Sbjct: 78  NADPVVVPIYHSSTYRFKTVDQFNEDNHGANFVYRRCGNPTTENVEVVINEIEGGAGSLL 137

Query: 347 FAS 355
           + S
Sbjct: 138 YNS 140


>Z78542-10|CAB01751.2|  428|Caenorhabditis elegans Hypothetical
           protein C18B12.6 protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 407 IVSSDDVYGGTNRLLRQVIARLGINTTFTDFTNIEKV 517
           +VSS D Y G + LLRQ I +   N T  DFT+ E++
Sbjct: 98  VVSSSDEYSGGDGLLRQTIQK---NPTRFDFTDEEQM 131


>AL031620-6|CAA20929.2|  428|Caenorhabditis elegans Hypothetical
           protein C18B12.6 protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 407 IVSSDDVYGGTNRLLRQVIARLGINTTFTDFTNIEKV 517
           +VSS D Y G + LLRQ I +   N T  DFT+ E++
Sbjct: 98  VVSSSDEYSGGDGLLRQTIQK---NPTRFDFTDEEQM 131


>Z46791-6|CAA86759.1|  395|Caenorhabditis elegans Hypothetical
           protein C09G5.7 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 331 KIRSNVRFWPRSDHNFGCSAKSRRSHR 411
           K  S++   P S HN G S+KSR+S R
Sbjct: 150 KSDSSLETMPESSHNSGQSSKSRKSQR 176


>Z78417-2|CAB01692.1|  258|Caenorhabditis elegans Hypothetical
           protein C35C5.3b protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 541 GVFLHGVLYFFNICKV-RKCSVDSQSCD 461
           GVF+ GVL+F ++C V R  S +  S D
Sbjct: 16  GVFIIGVLFFMSVCDVLRTVSAEEHSHD 43


>AF100663-3|AAC68980.1|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein20 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 494 DFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKI 613
           D  N  K +  M +N   IW++  TNPL  +  +E + KI
Sbjct: 77  DIANFVKGRATMLKN---IWLQDNTNPLTMIKKVETMSKI 113


>U64599-5|AAM69110.1|  303|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 5, isoform c
           protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +2

Query: 131 KPGFATIAIHAGQEPEKWNSAAVVTPIVTSTTFKQPAPAEHTGFEYGRSGNPTRNTLEEC 310
           KP   + A+H G+  ++W    +    V  TT   P PA    FE          + EE 
Sbjct: 217 KPWHGSAAVHTGEHFQQWQK--IYHAHVNHTTNNTPCPA-FVPFERREEYQAASPSTEER 273

Query: 311 LAALDGGK 334
            AA + G+
Sbjct: 274 RAAWEAGQ 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,685,438
Number of Sequences: 27780
Number of extensions: 324389
Number of successful extensions: 973
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)