Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p15r
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    30   0.40 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    29   0.71 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.0  

>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = -1

Query: 454 IFVSPSNITIDHLH*LIGNVLNGKNLFVFYVILGINNFNQYIFAHVASFVII**QYSFVY 275
           IF+SP  + IDH+H      L G  L ++ ++L     N  + A + S  +I  ++ F+Y
Sbjct: 138 IFLSPGLLIIDHIHFQYNGFLFG--LLLWSIVLAKPEKNMLLSAAIFS-ALICFKHIFLY 194

Query: 274 IVP 266
           + P
Sbjct: 195 VAP 197


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 204 FGDCLQYDHSCACMNKLEYLRLKSNAFLYL 115
           + D L  D+ C+C N  + LRL  +AF++L
Sbjct: 511 YSDALLDDYLCSCWNLWKKLRLPVSAFVFL 540


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 627  LVLP-AGPRTALHTAA---AAPPRGPSLGPAHPGLSYPV 731
            + LP AGP +A  T+A   A PP G +    +PG+  PV
Sbjct: 1888 MALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPV 1926


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,166
Number of Sequences: 5004
Number of extensions: 62692
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)