Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10p15r
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 31 0.74
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 31 0.74
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 31 0.98
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 31 0.98
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 30 1.7
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546... 29 3.0
05_07_0162 + 28090579-28091343 29 3.0
03_01_0470 + 3619417-3619572,3619681-3619759,3620017-3620258,362... 29 3.9
03_01_0292 + 2255011-2255564,2256491-2256701,2256792-2256902,225... 29 5.2
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 28 6.9
08_02_1406 - 26854845-26855606 28 6.9
05_03_0586 + 15782645-15782721,15782781-15783405 28 6.9
02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987... 28 6.9
02_05_0912 - 32689665-32690007,32690117-32690275,32690380-326905... 28 6.9
02_03_0068 + 14711891-14712418 28 6.9
01_05_0551 + 23169751-23170491 28 6.9
07_03_0624 + 20044406-20044756,20045168-20045221 28 9.1
03_05_0507 + 25017031-25017333,25017397-25017855 28 9.1
01_01_0990 + 7847066-7847478,7847713-7848679 28 9.1
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 31.5 bits (68), Expect = 0.74
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = -2
Query: 696 ARVREGVPP--PLCAGRCVAPPAGPVCAFDAAGTARTFATL-CELEAV--SCRESTYYAV 532
AR+R +PP P CA R PP P A D A + T AT+ + AV CR + AV
Sbjct: 140 ARMRPILPPNIPRCASRRQPPPQCPAAAADDAPSTSTAATVKRQRNAVLTRCRSDSRLAV 199
Query: 531 TSLG 520
G
Sbjct: 200 RGGG 203
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 31.5 bits (68), Expect = 0.74
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +2
Query: 518 TPKLVTA*YVLSRHETASSSHRVANVLA-VPAASKAHTGPAGGATHRPAHSGGGTPSRTL 694
TP L A + H AS S VA + AA G G + HRP P L
Sbjct: 120 TPNLADARGLQRYHRQASQSAAVATTCSRCVAADATGCGSLGASRHRPWRPRAAAPRSAL 179
Query: 695 ARTSSPG 715
AR++ G
Sbjct: 180 ARSTFRG 186
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 605 PAASKAHTGPAGGATHRPAHS--GGGTPSRTLARTSSPGALISGALTSLTL 751
PA+S + + + AT PA G GTP+ T+ PGA + G T+ T+
Sbjct: 263 PASSPSGSQKSTTATPTPAAMMPGTGTPTTPTTATAMPGATMPGTATATTM 313
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 31.1 bits (67), Expect = 0.98
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 551 SRHETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 709
S TA+++ A AAS A TG A +P SGG T +L SS
Sbjct: 121 SSSATAAAAAAGAGTAGSTAASSASTGNAASTAAKPTASGGATHRLSLISASS 173
>01_06_0866 -
32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 557 HETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 709
H +A V +VP AS A + A GAT R HS G T +A++++
Sbjct: 248 HISAGQVKIAEPVFSVPLASTATSHSATGATDRDYHSLGSTNPLPIAKSTN 298
>06_01_0738 +
5458182-5458374,5460512-5461766,5461861-5462053,
5462151-5462344,5462443-5462601,5462683-5463025
Length = 778
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 605 PAASKAHTGPAGGATHRPAHSGGGT--PSRTLARTSSPGALISG 730
P AS H+G GG + GGG+ P LA + +P A SG
Sbjct: 64 PTASTKHSGSGGGGGAASNNGGGGSAPPPGNLAGSGTPPAKGSG 107
>05_07_0162 + 28090579-28091343
Length = 254
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 672 PPLCAGRCVAPPAGPV 625
PPL GRCV PP PV
Sbjct: 52 PPLAGGRCVGPPLYPV 67
>03_01_0470 +
3619417-3619572,3619681-3619759,3620017-3620258,
3620804-3621148,3623592-3624116
Length = 448
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Frame = +3
Query: 645 PRTALHTAAAAPPR----GPSLGPAHPGLS 722
P ALHT AAPP GP+ AHP L+
Sbjct: 130 PSPALHTRTAAPPSHCRPGPAPSGAHPSLA 159
>03_01_0292 +
2255011-2255564,2256491-2256701,2256792-2256902,
2257020-2257814
Length = 556
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 630 VLPAGPRTALHTAAAAPPRGPSLGPA 707
V PA PRTA+ AAA P++ PA
Sbjct: 15 VAPAAPRTAVVAAAAGTVSAPAVAPA 40
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 624 ILVLPAGPRTALHTAAAAPPRGPSLGPAHPGLSYP 728
++ LP G A+ +AA P P P HP S P
Sbjct: 333 MVTLPPGQTAAMMQNSAAMPIFPQFQPLHPATSLP 367
>08_02_1406 - 26854845-26855606
Length = 253
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 687 REGVPPPLCAGRCVAPPAGPVCAFDAAGTA 598
R+GVPP C G+CV G C AG A
Sbjct: 196 RDGVPPCCCCGQCV---CGGGCFVGCAGLA 222
>05_03_0586 + 15782645-15782721,15782781-15783405
Length = 233
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 590 NVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS 706
+VLA AAS+ PA A R + GGG P LA ++
Sbjct: 4 DVLAAAAASRRRAAPATAAGRR-RYGGGGQPVSDLAAST 41
>02_05_1055 -
33798162-33798290,33798417-33798604,33798707-33798767,
33799045-33799122,33799250-33799472,33799599-33799824,
33799922-33800116,33800210-33800627,33800904-33801182
Length = 598
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 636 PAGPRTAL-HTAAAAPPRGPSLGPAHPGLSYP 728
P G R + HTAAAA GP+LG P P
Sbjct: 60 PLGHRARMGHTAAAAAAAGPALGLTKPNAVEP 91
>02_05_0912 -
32689665-32690007,32690117-32690275,32690380-32690573,
32690669-32690861,32690956-32692169
Length = 700
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 605 PAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGA 718
PA S + P G AT+R SGGG S T + + G+
Sbjct: 92 PANSTSPEPPGGAATNRRGSSGGGGFSATGGQAGTNGS 129
>02_03_0068 + 14711891-14712418
Length = 175
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = -3
Query: 746 SKKSAHRI*EPRVSWSERGSA-RGCR-----RRCVQGGAWPRRQDQ 627
+ S HR E RV W+ GS+ RG R RR ++GG ++++
Sbjct: 35 TSSSRHRREEERVGWASGGSSGRGARQREEERRAIRGGGEEEKEEE 80
>01_05_0551 + 23169751-23170491
Length = 246
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 572 SSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 709
+S+R+ + P H G GG HR G+ R A T S
Sbjct: 42 TSNRLLSTCRFPRTPSLHGGGGGGGDHRTTDDDDGSNGRDQAATLS 87
>07_03_0624 + 20044406-20044756,20045168-20045221
Length = 134
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 584 VANVLAVPAASKAHTGPAGGATHRPAHSGGG 676
VA + ++P +K G AGG R A GGG
Sbjct: 11 VARLPSLPDPAKGGRGEAGGGRRRGADDGGG 41
>03_05_0507 + 25017031-25017333,25017397-25017855
Length = 253
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 584 VANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISG 730
V ++ A+P AH G A GGG R LAR++ G + G
Sbjct: 142 VRDLAAIPEDRWAHDGDYFERPLDDARGGGGVLFRVLARSAVAGGRVKG 190
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 560 ETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTL-ARTSSPGALISGAL 736
+ A+ V + A+P S GGAT PA G L A S A + GA+
Sbjct: 345 QKAAQIGAVTSTAAMPLVSPFEPTKPGGATASPADECGKFDGAALFAAASHHNANLGGAM 404
Query: 737 TSLT 748
+ LT
Sbjct: 405 SELT 408
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,441,665
Number of Sequences: 37544
Number of extensions: 418654
Number of successful extensions: 1719
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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