Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p15f
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.0  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    25   6.6  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    25   8.7  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   8.7  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -1

Query: 375  LVLP-AGPRTALHTAA---AAPPRGPSLGPAHPGLSYPV 271
            + LP AGP +A  T+A   A PP G +    +PG+  PV
Sbjct: 1888 MALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPV 1926


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 181 QAKTFPLNISN*VQIQTPPHSVRDS 107
           Q  +FPL   N  Q + P HS+RD+
Sbjct: 501 QPHSFPLRKQNVAQSEFPKHSLRDN 525


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 168 FRLTFPTESKYRHHRTAYEIVLIRNTNV-ARLSNYQNARIVVFRRTDVYGCRLIDS 4
           + + F  + K R     ++++  RN    A    ++N+++V  R   +Y C  +DS
Sbjct: 19  YYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDS 74


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 93  YFVLRLSRTLCGGVCIWTQLE---MLSGKVFACIVLVTVWIKADCASLPFIPTRLGSVKE 263
           Y+ LRL R   G   ++  L+     S K+F C V+ T W+  +   LP    R  S + 
Sbjct: 264 YWQLRLER---GYTQVYADLQNRLCTSSKLFGCPVVCTNWLLNNKQHLPIQCKRFRSERR 320

Query: 264 VSA 272
            +A
Sbjct: 321 ANA 323


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 216  SRLLSIQSLKLYKQKPFRLTFPTESKYRHHR--TAYEIVLIRNTNVARLSNYQNARIVVF 43
            S +  +Q+    K KP  L   TES+ + +R     E++ ++  + ARL   + + ++  
Sbjct: 1125 SAIAELQAKSSIKSKPLTLKTATESEIKGYRDQIQLEVLNLKPDSEARLQAIERSELLQK 1184

Query: 42   RR 37
            +R
Sbjct: 1185 KR 1186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,172
Number of Sequences: 5004
Number of extensions: 53289
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)