Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p15f
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53153-6|AAT81184.1|  638|Caenorhabditis elegans Germinal center...    33   0.16 
U53153-5|AAK77641.1|  651|Caenorhabditis elegans Germinal center...    33   0.16 
U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center...    33   0.16 
U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center...    33   0.16 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    31   0.49 
AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical...    31   0.86 
AF000265-9|AAB52943.2|  449|Caenorhabditis elegans Hypothetical ...    31   0.86 
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    29   2.0  
U80445-7|AAB37798.1|  368|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U80437-6|AAB37621.1|  368|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL021469-1|CAA16287.1|  207|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U53153-6|AAT81184.1|  638|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform d protein.
          Length = 638

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 433 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 263
           S  +  ++  A  +  ++HT  +GGAT     S  G+P+ +LART    SP    SG+  
Sbjct: 382 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 441

Query: 262 SLTL 251
           S  L
Sbjct: 442 SWEL 445


>U53153-5|AAK77641.1|  651|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform b protein.
          Length = 651

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 433 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 263
           S  +  ++  A  +  ++HT  +GGAT     S  G+P+ +LART    SP    SG+  
Sbjct: 395 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 454

Query: 262 SLTL 251
           S  L
Sbjct: 455 SWEL 458


>U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform c protein.
          Length = 650

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 433 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 263
           S  +  ++  A  +  ++HT  +GGAT     S  G+P+ +LART    SP    SG+  
Sbjct: 394 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 453

Query: 262 SLTL 251
           S  L
Sbjct: 454 SWEL 457


>U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform a protein.
          Length = 653

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 433 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 263
           S  +  ++  A  +  ++HT  +GGAT     S  G+P+ +LART    SP    SG+  
Sbjct: 397 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 456

Query: 262 SLTL 251
           S  L
Sbjct: 457 SWEL 460


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 327 PPPLCAGRCVAPPAGPVCAFDAAGT-ARTFATLCELEAVSCRESTYYAVTSLGVC 488
           P  +C   C     G V      G+   T++ LCEL+  +C+        S+G+C
Sbjct: 798 PDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACKHQIDVVPVSMGIC 852


>AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical
           protein C18G1.1 protein.
          Length = 136

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 207 LSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVL 103
           +S+  LK Y +KP R    TE++ +H+RT + I+L
Sbjct: 45  ISLFPLKDYSRKPGRGPQRTEAEMKHYRTVFYIIL 79


>AF000265-9|AAB52943.2|  449|Caenorhabditis elegans Hypothetical
           protein C18E3.2 protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 267 SAPDMRAPGELVRARVREGVPPPLCAGRCVAPPAGPV 377
           SAP MR PG         G PP +   R VAPPA P+
Sbjct: 21  SAPQMRRPGGFA------GQPPQMHGPRMVAPPAAPL 51


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -3

Query: 439 TASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTS 260
           +ASS +   +      AS   T  +G +T  P+   G + S     T +  + ISG+  S
Sbjct: 597 SASSIYSTLSGSTGSTASPGTTESSGSSTSGPSTISGSSASTVTGSTVTEASTISGSTES 656

Query: 259 LTLP 248
            T+P
Sbjct: 657 STIP 660


>U80445-7|AAB37798.1|  368|Caenorhabditis elegans Hypothetical
           protein C50F2.5 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 144 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 43
           +KY    T  E+V+ +N++    SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222


>U80437-6|AAB37621.1|  368|Caenorhabditis elegans Hypothetical
           protein C43E11.5 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 144 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 43
           +KY    T  E+V+ +N++    SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222


>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
           protein Y57E12B.3 protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 375 LVLPAGPRTALHTAAAAPPRGPSLGPAHPGLS 280
           + + A P  +  +AAA  P  P++GPA  GL+
Sbjct: 14  ITVSAAPTDSSPSAAATSPATPTIGPAQNGLT 45


>Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical
           protein F49B2.3 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 373 GPAGGATHRPAHSGGGT 323
           GP G   HRP HS G T
Sbjct: 72  GPRGARDHRPRHSAGNT 88


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 411 MSSPFRLHQRRILVLPAGPRTALHTAAAAPPRGPSLGPAHPG 286
           ++ P    Q+  +  PAG         A  P+GP+  P HPG
Sbjct: 121 VAGPKSHEQQECIKCPAGSPGPAGAPGAPGPQGPNGQPGHPG 162


>AL021469-1|CAA16287.1|  207|Caenorhabditis elegans Hypothetical
           protein Y116A8B.1 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 373 GPAGGATHRPAHSGGGT 323
           GP G   HRP HS G T
Sbjct: 70  GPRGARDHRPRHSAGNT 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,541,903
Number of Sequences: 27780
Number of extensions: 320854
Number of successful extensions: 1216
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)