Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p15f
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.44 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.59 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   9.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -3

Query: 364 GGATHRPAHSGGGTPS---RTLARTSSPGA 284
           G   H P H+  G PS    T+A TS+PG+
Sbjct: 209 GYGRHLPGHAQMGRPSYTTATMATTSTPGS 238


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -3

Query: 442 ETASSSHRVANVLAVPAASKAHTGPAGGATH--RPA-HSGGGTPSRTLARTSSPGALI 278
           ET SS      + + P++S + + PA GA    +P+  +GG T  + L R  S  +L+
Sbjct: 506 ETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLL 563


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 324 PPRGPSLGPAH 292
           PP+ P  GP H
Sbjct: 169 PPQNPRFGPTH 179


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 324 PPRGPSLGPAH 292
           PP+ P  GP H
Sbjct: 169 PPQNPRFGPTH 179


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 324 PPRGPSLGPAH 292
           PP+ P  GP H
Sbjct: 407 PPQNPRFGPTH 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,308
Number of Sequences: 438
Number of extensions: 4163
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)