Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10p13r
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0588 - 23456714-23456902,23458533-23458739 31 0.62
09_04_0387 - 17197626-17197785,17198095-17198213,17198751-171988... 31 1.1
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 31 1.1
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 2.5
04_03_0585 + 17570853-17571404 29 3.3
01_01_0326 - 2642408-2643607 29 3.3
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025... 28 5.8
05_01_0402 - 3173354-3173591,3173704-3173828,3174104-3174370,317... 28 5.8
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 28 5.8
>01_05_0588 - 23456714-23456902,23458533-23458739
Length = 131
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 597 VQRTVPALGLRGHEGDVHSLQLRRMSRQPEQLPHARRLY 481
V R P+L LRG DV S + R+ + + H RRLY
Sbjct: 42 VYRDHPSLKLRGVPKDVRSHDIERVRNKENSIRHYRRLY 80
>09_04_0387 -
17197626-17197785,17198095-17198213,17198751-17198857,
17199000-17199078,17199210-17199551,17199695-17199847,
17199949-17200267,17200457-17200680
Length = 500
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 633 QTHMYGGTHSRAVQRTVPALGLRGHEGDVHSLQLRRMSRQP 511
Q H++ T+ R+ +R + L H+GD H L+LR++ + P
Sbjct: 105 QAHLFKPTYPRSKERMIGPSALFFHQGDYH-LRLRKLVQGP 144
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -2
Query: 339 WSYPDGKSRRLSGEPVERLEQVQPALRSRLPGARQDYSCTARPGRSAVSEANVAAPTV 166
W +P R +G R V+PA + LP A A P + S A AAPT+
Sbjct: 369 WPFPTSPKRAAAGSRRGRAPAVEPAAAAPLPPA-----AVAAPASTGPSRARSAAPTL 421
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -2
Query: 651 HRHAHRQTHMYGGTHSRAVQRTVPALGLRGHEGD 550
H H H +GG H R PA + GH D
Sbjct: 548 HSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHD 581
>04_03_0585 + 17570853-17571404
Length = 183
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 643 CSPPNAYVWRNPLKGRAEDCTSAGPSWP*RGCAFPSTTADVAA 515
C+P A R+ R +DC AG S+P C+ P+T + A
Sbjct: 30 CNPSGAI--RSSTTHRCQDCCKAGQSYPTYTCSPPTTGSSTDA 70
>01_01_0326 - 2642408-2643607
Length = 399
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 323 GSPGDCQVSQWSDWSKCSQPC 261
GSPG C + WSD PC
Sbjct: 322 GSPGFCSLKSWSDHPTTDDPC 342
>09_04_0286 +
16400695-16401369,16401473-16401658,16402115-16402575,
16402678-16402836,16402914-16403265,16403360-16403653
Length = 708
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 657 LHHRHAHRQTHMY-GGTHSRAVQRTVPALGLRGHEGD 550
LHH H H ++ G + S A R+ PA L G + D
Sbjct: 103 LHHHHHHSPVSVFQGPSSSPAASRSPPASWLAGRDRD 139
>05_01_0402 -
3173354-3173591,3173704-3173828,3174104-3174370,
3174488-3174856,3175099-3175608
Length = 502
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 513 PEQLPHARRLYEHLQDYARWSSAGGI 436
P+ +PH R + H ++ +W+S G+
Sbjct: 392 PQDMPHTFRKFAHPENAGKWNSGSGL 417
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 620 MEEPTQGPCRGLYQRWAFVAMKGMCIPFNYGGCRGSQNNFLTQEDC--MNTCKI 465
+E P +G + +F G C +N+G C SQ + QE C M C +
Sbjct: 783 LECPREGQVISNIKFASFGTPSGTCGNYNHGECSSSQALAVVQEACVGMTNCSV 836
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,097,221
Number of Sequences: 37544
Number of extensions: 432559
Number of successful extensions: 1317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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