Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p11r
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    27   0.72 
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     27   0.95 
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   0.95 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   2.9  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   2.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   3.8  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   3.8  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    25   3.8  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    24   5.1  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    23   8.8  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 200 VIKRNIIVALALSGVAGFTFKQLIGNER 117
           V  R IIV  A   VA FTF+QL G  +
Sbjct: 311 VFGRKIIVPKASGNVAWFTFEQLCGEPK 338


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 0.95
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -3

Query: 119 RKRKYAEFYRTYDAEKE-FEEMRKK 48
           RK  Y ++Y T+D  KE F+E++K+
Sbjct: 375 RKLGYTDYYDTFDGFKETFDELKKQ 399


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 0.95
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 288 NFSKIIIRHGWRKCSIDSEQASDA 217
           N SK +I++GW + S++SE  SDA
Sbjct: 472 NKSKYLIKNGWFEDSLNSEIWSDA 495


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 309 TV*LGIFNFSKIIIRHGWRKCSIDSEQAS 223
           TV  G   F   +  H WRK S DSE  S
Sbjct: 167 TVGSGASYFHNCLQAHNWRKYSEDSESMS 195


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 129 NELLEGKTSDARESQSNNNVTFDDGVEET 215
           NE+L    S++  ++S N  T D G  ET
Sbjct: 488 NEVLSRPNSNSNSAESRNGETDDSGESET 516


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 104 AEFYRTYDAEKEFEEMRKKGLFQSC 30
           A+F+R Y+A K F  ++K  +   C
Sbjct: 856 AKFWRAYNARKTFRGLKKSVIALQC 880


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 141 EGKTSDARESQSNNNVTFDDGVEETSHLRLARCR 242
           +GK +      S ++VTF D     S  R +RC+
Sbjct: 313 KGKEASEVNPNSTSSVTFSDFAAAISRSRCSRCK 346


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -3

Query: 209 LNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKG 45
           L  + ++NI   L         F QL+  E++ ++A     ++ EK  ++  K+G
Sbjct: 144 LTPITRKNIHKVLLFRKNGKAEFDQLVQKEKESEHARLKEDHEDEKTVKKDWKRG 198


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 455

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -3

Query: 83 DAEKEFEEMRKKGL 42
          +A KEF+E+R+KGL
Sbjct: 25 EAVKEFDELRQKGL 38


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 282 SKIIIRHGWRKCSIDSEQASD 220
           S+I +RH +R C+ D  + +D
Sbjct: 388 SEIHVRHAYRTCTADKMKKAD 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,860
Number of Sequences: 5004
Number of extensions: 19947
Number of successful extensions: 76
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)