Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p09r
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    24   1.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.7  

>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +2

Query: 272 KIYKCSENKTIMNQSNNESTVE-------SGLALPLALLTSMVDGNHSPPGRPYARLPTR 430
           KI     NKTI N +NN   ++         + +P+ +   +  GN  P  RP    P  
Sbjct: 80  KIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPIPVPVYYGNFLP--RPMG--PWI 135

Query: 431 AIKKLITKFQNIIP 472
           +I++ I +F++I P
Sbjct: 136 SIQEQIPRFRHIGP 149


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 602 KPLYPKRTARDFRPRGHCIRTPCGYPR 682
           +P+ P  + ++  PR  CI  P  +PR
Sbjct: 133 RPMGPWISVQEQVPRFRCIGPPTPFPR 159


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 61  EFFYNTTQSYY 93
           E FY T+Q YY
Sbjct: 201 EIFYTTSQQYY 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,337
Number of Sequences: 438
Number of extensions: 4739
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)