Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10p07r
(487 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73898-7|CAA98070.1| 577|Caenorhabditis elegans Hypothetical pr... 30 0.77
AF100306-9|ABB88216.1| 105|Caenorhabditis elegans Hypothetical ... 29 1.8
U23454-5|AAC46516.1| 84|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z66520-5|CAA91386.1| 215|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z70212-8|CAB54284.1| 320|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF016449-2|AAG24006.1| 333|Caenorhabditis elegans Seven tm rece... 28 4.1
U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium) v... 24 4.8
U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium) v... 24 4.8
U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium) v... 24 4.8
Z92812-4|CAB07278.1| 313|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z92812-1|CAB07276.1| 334|Caenorhabditis elegans Hypothetical pr... 27 5.5
AC024849-4|AAL27260.2| 152|Caenorhabditis elegans Hypothetical ... 27 7.2
Z93388-15|CAB07667.1| 356|Caenorhabditis elegans Hypothetical p... 27 9.5
Z93374-10|CAB07561.1| 356|Caenorhabditis elegans Hypothetical p... 27 9.5
Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical pr... 27 9.5
AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine... 27 9.5
AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine... 27 9.5
AC006673-5|AAF39919.2| 335|Caenorhabditis elegans Serpentine re... 27 9.5
>Z73898-7|CAA98070.1| 577|Caenorhabditis elegans Hypothetical
protein ZK822.5a protein.
Length = 577
Score = 30.3 bits (65), Expect = 0.77
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = -2
Query: 447 KNTSWHKLLQIKYGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGS 268
K+T H+ +Y + + F L +L +++ + +Y P + LSP+ I YL
Sbjct: 114 KSTCLHEYFIHRYNSILIRRL--FSLLFLLFTIVYMSVVLYAPSVALSPVLQINKWYL-V 170
Query: 267 LMF---MFFVTAVGNLETILFGKAFQLKLPEVVLSMGI-SLIAAGMVH 136
L+F T +G L+ +++ + Q V++ G+ +LI G+ H
Sbjct: 171 LIFGCTTTLYTCLGGLKAVVWTDSLQ----AVIMYTGVFTLIYKGLSH 214
>AF100306-9|ABB88216.1| 105|Caenorhabditis elegans Hypothetical
protein T24C4.9 protein.
Length = 105
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = -2
Query: 315 LILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVH 136
++L + ++ GYL SL M + T L ++FG + + +V+ + + I + +
Sbjct: 25 MVLRSVIVLSAGYLASLALMGYFTIKMTLMCVVFGTNTLVIITDVISMIAVFTIRSDQLR 84
Query: 135 R 133
R
Sbjct: 85 R 85
>U23454-5|AAC46516.1| 84|Caenorhabditis elegans Hypothetical
protein C10A4.2 protein.
Length = 84
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 126 FTTCLIFCVITIYYMNKLSQKKYAVVAPQPAAVKS 22
F CL+ ++ + Y+ KY V PQPA S
Sbjct: 8 FDICLVIALVIVNYLPDTPVSKYRVGPPQPAEYMS 42
>Z66520-5|CAA91386.1| 215|Caenorhabditis elegans Hypothetical
protein F49E12.7 protein.
Length = 215
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -2
Query: 369 SSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKL 190
SS L++ + S M + KP +L P ++ Y L + TA LE + F+L L
Sbjct: 113 SSALSISLISLMCVPKPLWLLWPGLLMQSSYTLGLSVLTMATAPKILEALGGVIDFELAL 172
Query: 189 PEVVLSMGISL 157
V SMG ++
Sbjct: 173 IFTVYSMGFAM 183
>Z70212-8|CAB54284.1| 320|Caenorhabditis elegans Hypothetical
protein R04D3.12 protein.
Length = 320
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 341 ENIKRVNIDDSTKDVALFTAILPYFIWSNLCQLV 442
E ++ VNID + + L AIL Y W N LV
Sbjct: 164 EELRVVNIDGNNSRMYLIFAILNYSHWPNTSNLV 197
>AF016449-2|AAG24006.1| 333|Caenorhabditis elegans Seven tm
receptor protein 244 protein.
Length = 333
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -2
Query: 426 LLQIKYGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFV 247
+ +I Y + + +A F + ++I S +M PQ P T IF G + +F +
Sbjct: 49 IFEIIYSVLDILAAPDFFSHDSIFIVITSSERMLVPQFFQVPFTNIFCSMFGVSLVIFVI 108
>U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
b protein.
Length = 495
Score = 24.2 bits (50), Expect(2) = 4.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 274 WFINVHVLCNCCW 236
W IN ++ NCCW
Sbjct: 167 WKINDGLMSNCCW 179
Score = 21.8 bits (44), Expect(2) = 4.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1
Query: 172 DGNIIDCCWHG 140
DG + +CCW G
Sbjct: 171 DGLMSNCCWRG 181
>U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
a protein.
Length = 490
Score = 24.2 bits (50), Expect(2) = 4.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 274 WFINVHVLCNCCW 236
W IN ++ NCCW
Sbjct: 162 WKINDGLMSNCCW 174
Score = 21.8 bits (44), Expect(2) = 4.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1
Query: 172 DGNIIDCCWHG 140
DG + +CCW G
Sbjct: 166 DGLMSNCCWRG 176
>U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
c protein.
Length = 477
Score = 24.2 bits (50), Expect(2) = 4.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 274 WFINVHVLCNCCW 236
W IN ++ NCCW
Sbjct: 162 WKINDGLMSNCCW 174
Score = 21.8 bits (44), Expect(2) = 4.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1
Query: 172 DGNIIDCCWHG 140
DG + +CCW G
Sbjct: 166 DGLMSNCCWRG 176
>Z92812-4|CAB07278.1| 313|Caenorhabditis elegans Hypothetical
protein T03E6.4 protein.
Length = 313
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 144 MVHRICFTTCLIFCVITIYY 85
M+ +CFTT ++FC I IYY
Sbjct: 206 MIIVVCFTT-ILFCSINIYY 224
>Z92812-1|CAB07276.1| 334|Caenorhabditis elegans Hypothetical
protein T03E6.1 protein.
Length = 334
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 144 MVHRICFTTCLIFCVITIYY 85
M+ +CFTT ++FC I IYY
Sbjct: 206 MIIVVCFTT-ILFCSINIYY 224
>AC024849-4|AAL27260.2| 152|Caenorhabditis elegans Hypothetical
protein Y67D8B.5 protein.
Length = 152
Score = 27.1 bits (57), Expect = 7.2
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -2
Query: 132 ICFTTCLIFCVITIYYMNK 76
ICF +CLI+ ++++ Y+ K
Sbjct: 8 ICFVSCLIWFIVSLMYIKK 26
>Z93388-15|CAB07667.1| 356|Caenorhabditis elegans Hypothetical
protein C06C6.1 protein.
Length = 356
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -2
Query: 378 FVLSSILTLLIFSGMQMYKPQLI--LSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKA 205
FV S++T + Q + Q+ L T I ++ + + ++T +GN+ T+ FG+
Sbjct: 221 FVTKSLMTSAYSANFQKLQWQMFYALVSQTGIPILFMQFPVTLIYITCLGNISTLFFGQL 280
Query: 204 FQLKL 190
QL +
Sbjct: 281 QQLTI 285
>Z93374-10|CAB07561.1| 356|Caenorhabditis elegans Hypothetical
protein C06C6.1 protein.
Length = 356
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -2
Query: 378 FVLSSILTLLIFSGMQMYKPQLI--LSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKA 205
FV S++T + Q + Q+ L T I ++ + + ++T +GN+ T+ FG+
Sbjct: 221 FVTKSLMTSAYSANFQKLQWQMFYALVSQTGIPILFMQFPVTLIYITCLGNISTLFFGQL 280
Query: 204 FQLKL 190
QL +
Sbjct: 281 QQLTI 285
>Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical
protein R06A4.10b protein.
Length = 511
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 427 ITPNKIRQNGGKQCHVLRTVVNIN 356
+TP K+ NGGK+C + + V I+
Sbjct: 371 LTPEKLIDNGGKRCTINKDVTCIS 394
>Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical
protein R06A4.10a protein.
Length = 514
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 427 ITPNKIRQNGGKQCHVLRTVVNIN 356
+TP K+ NGGK+C + + V I+
Sbjct: 374 LTPEKLIDNGGKRCTINKDVTCIS 397
>AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine
receptor alternativevariant b protein.
Length = 459
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 427 ITPNKIRQNGGKQCHVLRTVVNIN 356
+TP K+ NGGK+C + + V I+
Sbjct: 319 LTPEKLIDNGGKRCTINKDVTCIS 342
>AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine
receptor 20 (63.9kD) alternative variant a protein.
Length = 553
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 427 ITPNKIRQNGGKQCHVLRTVVNIN 356
+TP K+ NGGK+C + + V I+
Sbjct: 413 LTPEKLIDNGGKRCTINKDVTCIS 436
>AC006673-5|AAF39919.2| 335|Caenorhabditis elegans Serpentine
receptor, class h protein8 protein.
Length = 335
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/91 (21%), Positives = 41/91 (45%)
Frame = -2
Query: 330 MYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKLPEVVLSMGISLIA 151
++K ++ +T++ G ++ F + + ++ T L K Q+ + ISL+
Sbjct: 193 IFKLFYVICAVTVVTGTTSATIAFGITIKCINSVRTRLSAKTKQMHR-----NFLISLLI 247
Query: 150 AGMVHRICFTTCLIFCVITIYYMNKLSQKKY 58
A +H C L+ + I ++ LSQ Y
Sbjct: 248 AAAIHGGCILIPLLGFLWAISFVVSLSQCPY 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,413,125
Number of Sequences: 27780
Number of extensions: 235401
Number of successful extensions: 637
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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