Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p07f
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   1.8  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   3.1  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   3.1  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   5.4  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    25   9.4  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   9.4  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   9.4  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 83  KMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLG--SLMFMFFVTAV 250
           +M +NS +     S LT+ + +G+  Y     LS   +I  GYL   S+ F+  V +V
Sbjct: 323 QMRINSPSHVQRLSFLTIAMQAGLDAYIAIFFLSTNAVIEKGYLPFVSVAFLSLVPSV 380


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 212 LGSLMFMFFVTAVGNLETILFGKAFQLKLPEVVL-SMGISLIAAGMVHRICFTTCLIF 382
           L  L F  F   V  + ++L G    + LP ++L ++ I  +AA +     FTTCLI+
Sbjct: 131 LTGLCFATFSYEVSPVVSVLSG-VLLISLPTLILLNLCILKLAAKLHLSALFTTCLIY 187


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 294 FNWNALPNRIVSRLPTAVTK 235
           FNW++L + ++ R+P A TK
Sbjct: 11  FNWSSLSSILLPRIPLATTK 30


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 280 SIPIEITRSSTIDGNIIDCCWHGPQDLFHHMPHFLRDNHLL 402
           S+PI  + S T    I+  C HG       +PH+++   ++
Sbjct: 113 SLPIVGSISETSVSGIMSTCTHGSSLQHQVLPHYIKSMRIM 153


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 324 IPIDSTTSGNFNWNALPN 271
           +P D++T+ +F WN L N
Sbjct: 331 LPADASTARSFGWNVLIN 348


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 174 SCGLYICIPENIKRVNIDDSTKDVALFTAILPYFIWSN 61
           +C  +IC+ ++IKR+  D+  +D +L    +P  I+ +
Sbjct: 882 ACQHFICVKDSIKRLG-DNKFEDKSLRICTIPNSIFDS 918


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = +2

Query: 248 VGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVHRICFTTCLIFCVITIYYMNKLSQKK 427
           +GN++   FGKAF +++P  ++S G        ++ I   T L    +T  Y+ +LS  +
Sbjct: 724 LGNVKDSCFGKAFNVEIP--IISRGFLEAIPVKINSIGKRT-LGNLTLTCLYIPELSVPE 780

Query: 428 YAVVAPQPAAVKSRRHK*NN 487
             +      A    RH  +N
Sbjct: 781 QELPFTLEQATMDLRHVRSN 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,183
Number of Sequences: 5004
Number of extensions: 46430
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)