Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p02f
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-15|AAG24139.2|  321|Caenorhabditis elegans Hypothetical...    30   1.1  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>AF016685-15|AAG24139.2|  321|Caenorhabditis elegans Hypothetical
           protein F59E11.2 protein.
          Length = 321

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
 Frame = +3

Query: 195 NKTYLEAA--LASEVAMLEADIVLGHLTGHDGPPIPIMAHPPATTSDLSLAEFLSTVAQY 368
           N+T ++ A  +  E   LE + + G  T + G  +  +A  P          F   +AQ 
Sbjct: 212 NRTIIDDAYKMIKENPELE-EFIKGESTEYTGKALARLAMDPGKLKKSGKTLFTEDLAQK 270

Query: 369 NNVNNKQKGVKLDFKSIEVF--SKSQELIAPYSKPQVTFPLWL 491
            + ++K      + +SI     +  +E +A Y  PQ+  P W+
Sbjct: 271 YDFSDKHGMEPQNIRSIRTILGTMGKEEVAKYIPPQIKLPKWV 313


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 90  TMFLVIILFVTATFVTCEEETMKNLTTVTWAHA 188
           ++ L+ +L +++TFV  +EET+KN T +  + A
Sbjct: 8   SILLIAVLALSSTFVFADEETVKNETGLALSRA 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,688,175
Number of Sequences: 27780
Number of extensions: 273834
Number of successful extensions: 727
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)