Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10p01r
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 378 e-106
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 377 e-105
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 376 e-105
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.54
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.2
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 2.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.8
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.8
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 3.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.8
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 6.7
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 8.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.8
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 378 bits (929), Expect = e-106
Identities = 170/243 (69%), Positives = 204/243 (83%)
Frame = -2
Query: 750 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 571
LKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QR
Sbjct: 9 LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQR 68
Query: 570 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 391
LIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKR
Sbjct: 69 LIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKR 128
Query: 390 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 211
V G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN
Sbjct: 129 VQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRN 188
Query: 210 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 31
+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSI 248
Query: 30 AEE 22
EE
Sbjct: 249 TEE 251
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 377 bits (927), Expect = e-105
Identities = 169/243 (69%), Positives = 204/243 (83%)
Frame = -2
Query: 750 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 571
LKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QR
Sbjct: 9 LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQR 68
Query: 570 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 391
LI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKR
Sbjct: 69 LIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKR 128
Query: 390 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 211
V G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN
Sbjct: 129 VQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRN 188
Query: 210 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 31
+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSI 248
Query: 30 AEE 22
EE
Sbjct: 249 TEE 251
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 376 bits (926), Expect = e-105
Identities = 169/243 (69%), Positives = 204/243 (83%)
Frame = -2
Query: 750 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 571
LKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QR
Sbjct: 9 LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQR 68
Query: 570 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 391
LIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKR
Sbjct: 69 LIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKR 128
Query: 390 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 211
V G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN
Sbjct: 129 VQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRN 188
Query: 210 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 31
+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSI 248
Query: 30 AEE 22
EE
Sbjct: 249 TEE 251
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +1
Query: 67 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 192
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 520 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 675
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -2
Query: 579 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 400
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 399 VK-RVATGPKNVPYLVTHDGR 340
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 313 QSQRFHPVRHCNYED 269
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 255 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 151
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 100 HVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLDEVHNLRS 279
H P GEG R V N + + +H+P+ S+ +T PGLK + + +
Sbjct: 287 HNTTPDGEGKYRSV---QNGRALNYVSSFNSDSHSPKDYISQSYTNEPGLKKESADSFNN 343
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 513 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 337
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 336 IR 331
++
Sbjct: 1778 LK 1779
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 157 VEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLDEVH 267
V A LAGH A VTAS+D +++ LK D +
Sbjct: 207 VHSATKYLAGHSDVLAG-VTASKDRSKILDLKADRAY 242
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 8.8
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Frame = +1
Query: 40 ADALAARQRDVRLRALADYEHVVQPRGEGVSRGVLD----VHNVEG--AGMSLAGHDGAH 201
A+ A +V L A+ D V + RG V R L VH + G A + L H A
Sbjct: 122 AERAKAAGMNVELVAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDLHQVAQ 181
Query: 202 APQ--------VTASRDHTQVPGLKLD 258
Q + AS DH VPG K +
Sbjct: 182 VAQSVIDNAATIAASLDHCAVPGRKFE 208
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 418 SLLRGDTVDCESALNIID*TKQ 483
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,853
Number of Sequences: 5004
Number of extensions: 74780
Number of successful extensions: 231
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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