Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p01r
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   345   2e-95
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    39   0.004
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    36   0.041
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.6  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.6  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   6.2  
Z30317-6|CAA82972.3|  193|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF209707-1|AAF28335.1|  522|Caenorhabditis elegans phosphoinosit...    28   8.2  
AC006708-6|AAF60427.2|  522|Caenorhabditis elegans Phosphoinosit...    28   8.2  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  345 bits (849), Expect = 2e-95
 Identities = 162/243 (66%), Positives = 192/243 (79%)
 Frame = -2

Query: 750 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 571
           LKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR
Sbjct: 8   LKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQR 67

Query: 570 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 391
           +++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK 
Sbjct: 68  VVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKS 127

Query: 390 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 211
           V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  +TGGRN
Sbjct: 128 VRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRN 187

Query: 210 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 31
           +GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G GIRL+I
Sbjct: 188 VGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSI 247

Query: 30  AEE 22
           AEE
Sbjct: 248 AEE 250


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -1

Query: 196 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 32
           HH    E      H  H G HGTH  H          GH G  H A A  GH  HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580



 Score = 36.3 bits (80), Expect = 0.023
 Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = -1

Query: 205 ARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 32
           A  HH    E      H  H G HGTH  H          GH G  H A A  GH   H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEH 522



 Score = 35.9 bits (79), Expect = 0.031
 Identities = 21/60 (35%), Positives = 23/60 (38%)
 Frame = -1

Query: 196 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGSG 17
           HHR   E        AH G HGTH  H  E   H+   H G H +     H P H    G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459



 Score = 35.5 bits (78), Expect = 0.041
 Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
 Frame = -1

Query: 226 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 56
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE G H  A 
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702

Query: 55  RQGHPP---HHRRGSGTSASQ 2
              H     HH  G  +  S+
Sbjct: 703 HGHHDDKENHHHHGHHSKHSK 723



 Score = 35.1 bits (77), Expect = 0.054
 Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 1/107 (0%)
 Frame = -1

Query: 340 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRL 164
           HH  +   +  +  H P  H ++ ++G H     E  + H     G  G H         
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554

Query: 163 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 23
               AH G HG H  H      H   GH G H      GH   H  G
Sbjct: 555 HHSPAHHGHHGEH--HHAPAH-HGHHGHHGSH--GVHHGHHESHGHG 596



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 27/110 (24%), Positives = 34/110 (30%), Gaps = 2/110 (1%)
 Frame = -1

Query: 340 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARG-HHRVPRETSR 167
           HH  +   +  +  H P  H ++ ++G H          H     G  G HH  P     
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518

Query: 166 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGSG 17
              H  H   HG H  H      H   G  G H       H P H    G
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHG 565



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = -1

Query: 157 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHH 32
           H AH   HG H RH  E    H+   H G H      GH   H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGHHGEH 432



 Score = 31.9 bits (69), Expect = 0.51
 Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
 Frame = -1

Query: 340 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRL 164
           HH  +   +  +  H P  H ++  +G H V        HG       GHH  P      
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGV-------HHGHHESHGHGHH-APA----- 601

Query: 163 LRHCAHQGLHGTHL-RHEVEQRVHNRQGHEGVHLAAARQGHPPHH 32
             H  H G HG H   H      H+  GH G H       H PHH
Sbjct: 602 --HHGHHGEHGVHHGHHGAGYGAHH--GHHGAH-----HHHAPHH 637



 Score = 31.5 bits (68), Expect = 0.67
 Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
 Frame = -1

Query: 295 PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRH 116
           P  H ++ ++G+H        Y       GA  HH  P           H G HG H  H
Sbjct: 600 PAHHGHHGEHGVHHG-HHGAGYGAHHGHHGAH-HHHAPHHEHHEHHGDHHHGSHGVHHGH 657

Query: 115 EVEQRV---HNRQG----HEGVHLAAARQG-HPPHHRRGS 20
                    H   G    H G H + A  G H  HH  G+
Sbjct: 658 HGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGA 697


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = -1

Query: 157 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGSGTSASQ 2
           HC   G HG H       R H   G  G      R GH  PPHH    G S S+
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSR 412



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -1

Query: 157 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 32
           HC    G HG    H  + R  +R GH   H    R   PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -2

Query: 456 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 325
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 238 LVYDHGRP*LGARGHHRVPRETSRLLRH 155
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 238 LVYDHGRP*LGARGHHRVPRETSRLLRH 155
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 45  CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 134
           C C+ A  C P CP   + + CS T  R C+P
Sbjct: 54  CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +2

Query: 299  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 463
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>Z30317-6|CAA82972.3|  193|Caenorhabditis elegans Hypothetical
           protein T16G12.3 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -1

Query: 226 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG 47
           HG P LG++ H+    ++       AH+ LH        E+ VH  QG++     A   G
Sbjct: 51  HGHPSLGSQSHNLTSAQSEG---RNAHKDLH--------ERHVHPSQGYQRHGSKAPAHG 99

Query: 46  HP 41
           HP
Sbjct: 100 HP 101


>AF209707-1|AAF28335.1|  522|Caenorhabditis elegans phosphoinositide
           3-kinase adaptersubunit protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 17  PASSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKE 166
           PA  + +  M L  G+EM    P  +   L ++  K  P + LMC  SKE
Sbjct: 290 PALCSRMAAM-LDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338


>AC006708-6|AAF60427.2|  522|Caenorhabditis elegans Phosphoinositide
           kinase adaptersubunit protein 1 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 17  PASSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKE 166
           PA  + +  M L  G+EM    P  +   L ++  K  P + LMC  SKE
Sbjct: 290 PALCSRMAAM-LDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,351,647
Number of Sequences: 27780
Number of extensions: 450888
Number of successful extensions: 1497
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)