Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10p01f
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.084
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.7  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.084
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 414 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 298
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -2

Query: 525 DFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQF 346
           D    +WI  G  +M +    + R G+  +  T L+ ++L    + CE  +NI    K +
Sbjct: 57  DVHVMIWIGFGF-LMTF----LRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSY 111

Query: 345 ISL 337
           +SL
Sbjct: 112 LSL 114


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 208 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 309
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 218 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 117
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 96  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 203
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 250 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 369
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 67  GPKKHLKRLNAP 102
           GPK+HL+ L  P
Sbjct: 336 GPKEHLRSLGIP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,664
Number of Sequences: 438
Number of extensions: 3952
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)