Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o24r
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.6  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   9.8  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   9.8  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   9.8  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   9.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.8  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   9.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   9.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   9.8  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   9.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   9.8  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   9.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 351 SSFQGSPFLY 380
           SSFQG PF Y
Sbjct: 216 SSFQGPPFTY 225


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 244 KIYRGQMHCQLYGEISTNESEGFTK 170
           K+Y+ +   + YGE S   S   T+
Sbjct: 48  KLYKNEREYRKYGETSKERSRNRTE 72


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 244 KIYRGQMHCQLYGEISTNESEGFTK 170
           K+Y+ +   + YGE S   S   T+
Sbjct: 48  KLYKNEREYRKYGETSKERSRNRTE 72


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 244 KIYRGQMHCQLYGEISTNESEGFTK 170
           K+Y+ +   + YGE S   S   T+
Sbjct: 48  KLYKNEREYRKYGETSKERSRNRTE 72


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 244 KIYRGQMHCQLYGEISTNESEGFTK 170
           K+Y+ +   + YGE S   S   T+
Sbjct: 48  KLYKNEREYRKYGETSKERSRNRTE 72


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 436 YKYCKNTKQSHCSKLFLKI 380
           Y Y  N   ++C KL+  I
Sbjct: 98  YNYNNNNYNNNCKKLYYNI 116


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 436 YKYCKNTKQSHCSKLFLKI 380
           Y Y  N   ++C KL+  I
Sbjct: 98  YNYNNNNYNNNCKKLYYNI 116


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 436 YKYCKNTKQSHCSKLFLKI 380
           Y Y  N   ++C KL+  I
Sbjct: 98  YNYNNNNYNNNCKKLYYNI 116


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 436 YKYCKNTKQSHCSKLFLKI 380
           Y Y  N   ++C KL+  I
Sbjct: 98  YNYNNNNYNNNCKKLYYNI 116


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 244 KIYRGQMHCQLYGEISTNESEGFTK 170
           K+Y+ +   + YGE S   S   T+
Sbjct: 281 KLYKNEREYRKYGETSKERSRNRTE 305


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 244 KIYRGQMHCQLYGEISTNESEGFTK 170
           K+Y+ +   + YGE S   S   T+
Sbjct: 281 KLYKNEREYRKYGETSKERSRNRTE 305


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 244 KIYRGQMHCQLYGEISTNESEGFTK 170
           K+Y+ +   + YGE S   S   T+
Sbjct: 281 KLYKNEREYRKYGETSKERSRNRTE 305


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 244 KIYRGQMHCQLYGEISTNESEGFTK 170
           K+Y+ +   + YGE S   S   T+
Sbjct: 281 KLYKNEREYRKYGETSKERSRNRTE 305


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 244 KIYRGQMHCQLYGEISTNESEGFTK 170
           K+Y+ +   + YGE S   S   T+
Sbjct: 281 KLYKNEREYRKYGETSKERSRNRTE 305


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 244 KIYRGQMHCQLYGEISTNESEGFTK 170
           K+Y+ +   + YGE S   S   T+
Sbjct: 270 KLYKNEREYRKYGETSKERSRNRTE 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,559
Number of Sequences: 438
Number of extensions: 2487
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)