Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o24f
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    71   2e-13
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    33   0.037
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    32   0.065
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    28   1.1  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   3.2  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   3.2  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    26   3.2  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    26   4.2  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   4.2  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   4.2  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   7.4  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   9.8  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    25   9.8  

>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 28/68 (41%), Positives = 46/68 (67%)
 Frame = +1

Query: 151 EMMSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQR 330
           E +++V + K  K++L  Y+ L++ CF+DC+ DFTS  L + E +C   C +K+L+ ++R
Sbjct: 10  EHLTQVLEAKQLKEYLNMYSTLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKHSER 69

Query: 331 VSQRFHEF 354
           V QRF EF
Sbjct: 70  VGQRFAEF 77


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 32.7 bits (71), Expect = 0.037
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 208 NKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 345
           +K++E CF+ CI +  S T    E  C   CME+Y+     VS+ +
Sbjct: 39  SKINENCFDKCIPEPGS-TFDPNEKSCVSKCMERYMDAWNIVSRTY 83


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 31.9 bits (69), Expect = 0.065
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +1

Query: 208 NKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 345
           ++ +  C+  CI +  ++  KS E++C  NC+E++L  N  + +R+
Sbjct: 38  HQFTSTCWPKCIGNIGNKLDKS-EEQCLQNCVERFLDCNFHIIKRY 82


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 133 TEMATPEMMSEVDQIKTFKDFLVQYNKLSELCFNDCI 243
           +E  +P+    + Q   FK+F+  +   S++ FNDC+
Sbjct: 243 SEKFSPDFTRGIWQCIGFKEFMPWFEAPSDIVFNDCL 279


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 193 FLVQYNKLSELCFNDCIHDFTSRTL 267
           F V Y  LS+   N C HDFT + L
Sbjct: 81  FTVFYQILSQFMQNICFHDFTIQDL 105


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 349 EFQMLANENMLALAQKSGNPS*KVWYICDLSSHFL*GVVRESTPYIMIYLCKCTV 513
           EF  LA+  +  L Q   +P+   +Y    S  FL         YI+I LCKC +
Sbjct: 687 EFYDLASREITLLQQSDNHPNIVRYYCKQKSDQFL---------YIVIELCKCNL 732


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 175 FDQLHSSFQGSPFLY-IFKKSLEQCDCLVFLQYL 77
           + +L+  +QGSPF + +F  +  +  C  ++Q+L
Sbjct: 131 YKELYKDWQGSPFFFALFSNAFGENQCRNWIQHL 164


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 130 YTEMATPEMMSEVDQIKTFKDFLVQYNK 213
           + +  TPE++ ++D+I  F    +QY +
Sbjct: 317 FIDKLTPEILKKIDEILNFTPLEIQYRR 344


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 208 NKLSELCFNDCIHDFTSRTLKSTEDKCTV 294
           NK++ LCF D I D +  ++K T  KC +
Sbjct: 81  NKIASLCFEDVI-DTSHVSIKLTLPKCVL 108


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 322 NQRVSQRFHEFQMLANENMLALAQ 393
           N RVS+R HEFQ    + + +L Q
Sbjct: 189 NLRVSKRVHEFQEFFGDGITSLTQ 212


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 543 QNFIDNNLDIHCTFAQVYHYIG 478
           Q F+++    +CTF Q+Y+ IG
Sbjct: 191 QEFVESCHGQYCTFQQIYNNIG 212


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 169 QLHSSFQGSPFLYIFKKSLEQCDCLVFLQYLY 74
           +L+ +FQ   +LY+  + +   DC   L+ LY
Sbjct: 627 KLYYAFQSRDYLYLVMEFMNGGDCASLLKSLY 658


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 90  NTKQSHCSKLFLKIYRNGD 146
           NT  +HC+KLF  I R+ D
Sbjct: 3   NTLYNHCTKLFQSIQRSLD 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,609
Number of Sequences: 5004
Number of extensions: 41190
Number of successful extensions: 126
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)