Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o24f
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0836 + 23550376-23550470,23551617-23551803 61 7e-10
05_01_0085 - 568015-568204,568286-568365 49 3e-06
08_02_1396 - 26742694-26742915,26743736-26743771 36 0.016
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135... 34 0.066
11_01_0184 - 1444246-1444434,1446291-1446719 33 0.15
03_05_0450 - 24443396-24443501,24443642-24443794,24446213-24446325 29 2.5
08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461 29 3.3
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 4.3
08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294 28 5.7
08_02_0927 - 22685348-22685635,22685823-22685972,22686224-22687042 27 10.0
02_04_0539 - 23745936-23746097,23746661-23747566 27 10.0
>12_02_0836 + 23550376-23550470,23551617-23551803
Length = 93
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 154 MMSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRV 333
M + VDQ++ +D L YN L E CF DC+ F +TL E+ C C EK+L+ + RV
Sbjct: 20 MAAMVDQLQ-IRDSLRMYNSLVERCFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMRV 78
Query: 334 SQRFHE 351
RF E
Sbjct: 79 GMRFAE 84
>05_01_0085 - 568015-568204,568286-568365
Length = 89
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Frame = +1
Query: 154 MMSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRV 333
M + D+++T +D + YN +S CF+DC+ F RTL E+ C +C+ K+L ++
Sbjct: 15 MEAVADKLQT-RDAIRLYNWVSHRCFSDCVTTFYRRTLGKKEEDCVRSCVRKFLLLSSAS 73
Query: 334 SQRF 345
+ RF
Sbjct: 74 AARF 77
>08_02_1396 - 26742694-26742915,26743736-26743771
Length = 85
Score = 36.3 bits (80), Expect = 0.016
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 211 KLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 345
KL+ +C++ CI S E C NC +++L M+ +++RF
Sbjct: 38 KLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDMSVIIAKRF 82
>12_01_0183 -
1350451-1350477,1350887-1350969,1350977-1352696,
1354258-1354428,1355892-1355939
Length = 682
Score = 34.3 bits (75), Expect = 0.066
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 211 KLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHE 351
KL+++C++ CI + ++E C NC +++L + QR E
Sbjct: 30 KLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFLELKMLTMQRPQE 76
>11_01_0184 - 1444246-1444434,1446291-1446719
Length = 205
Score = 33.1 bits (72), Expect = 0.15
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 211 KLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQR 342
KL+++C++ CI + ++E C NC +++ + + QR
Sbjct: 157 KLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFFELKMLIVQR 200
>03_05_0450 - 24443396-24443501,24443642-24443794,24446213-24446325
Length = 123
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 196 LVQYNKLSELCFNDCIHDFTSRT--LKSTED 282
L +N+ SE CF + +DF S+T LKS +D
Sbjct: 49 LTHFNEYSEQCFAEVSNDFASKTRLLKSMKD 79
>08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461
Length = 874
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 483 IGCAFSYYTLKKMTR*VTNIPYFLTRVTRFLC*C*HVFIGKHLELMESL 337
IGC S TL M + +P +TR+ + H+FIG ++L + +
Sbjct: 569 IGCLQSLETLNVMDNHMVQLPQCITRLGNLM----HLFIGNQIQLPDGI 613
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 303 HTVDSAFVLGRF*SPRRKIMNAIIETKFRQL 211
H V+S +G RK NA+++TKFR L
Sbjct: 373 HNVESKVYIGNISDNNRKWNNALLKTKFRGL 403
>08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294
Length = 358
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 245 MILRRGL*NLPRTNALSTVWRNIYE*IRGFHKDSMSS 355
+I R G+ ++ RT+ LS WR + +RG D SS
Sbjct: 30 IISRLGVRDVVRTSVLSHAWRRRWRSVRGLDLDFRSS 66
>08_02_0927 - 22685348-22685635,22685823-22685972,22686224-22687042
Length = 418
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 245 MILRRGL*NLPRTNALSTVWRNIYE*IRGFHKDSMSS 355
+I R + ++ RT+ALS WR +E +RG SS
Sbjct: 32 IISRLDIRDVVRTSALSRAWRRRWESVRGLDLSFRSS 68
>02_04_0539 - 23745936-23746097,23746661-23747566
Length = 355
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 157 MSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVS 336
+S ++ KDF +Q ++ D LKS + KC ++C E++ ++
Sbjct: 122 LSSETRLNKIKDF-IQKLEMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAE 180
Query: 337 QR-FHEFQMLANENMLALAQKSGN 405
R F+++ +N LA S N
Sbjct: 181 HRNLCRFRIVNCKNDGCLASFSAN 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,834,092
Number of Sequences: 37544
Number of extensions: 212072
Number of successful extensions: 458
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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