Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o24f
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)          37   0.010
SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09)               35   0.038
SB_48729| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.051
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)
          Length = 143

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +1

Query: 151 EMMSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQR 330
           E+M E  + K    F +Q +K ++ C++ C+ D     L    + C VNC+E+++     
Sbjct: 73  ELMIEEQKAK----FQMQVHKFTDTCWDKCM-DKPGNKLDGKTETCLVNCVERFIDTTLL 127

Query: 331 VSQRFHE 351
           +++RF E
Sbjct: 128 ITKRFGE 134


>SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 23/82 (28%), Positives = 44/82 (53%)
 Frame = +1

Query: 151 EMMSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQR 330
           +M+S +D+  T    L + NKL E+ FND   +  S +L+ T ++     M ++    ++
Sbjct: 193 KMLSLIDKTHTVHYELFRRNKLEEMGFNDGDANNKSHSLQETYEERRKEYMSQFQDKEEK 252

Query: 331 VSQRFHEFQMLANENMLALAQK 396
           + QRF + ++   EN L  A++
Sbjct: 253 MRQRFVQ-KVKDKENELKKAEQ 273



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 23/81 (28%), Positives = 42/81 (51%)
 Frame = +1

Query: 154 MMSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRV 333
           M S +D+  T    L + NKL E+ FND   +  S +L+ T ++     M ++    +++
Sbjct: 89  MNSLIDKTHTVHYELFRRNKLEEMGFNDGDANNKSHSLQETYEERRKEYMSQFQDKEEKM 148

Query: 334 SQRFHEFQMLANENMLALAQK 396
            QRF + ++   EN L  A++
Sbjct: 149 RQRFVQ-KVKDKENELKKAEQ 168


>SB_48729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 32

 Score = 34.7 bits (76), Expect = 0.051
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 184 FKDFLVQYNKLSELCFNDCIHDFTSRTLKSTE 279
           +K+FL+ YN+L+E CF+ C  +   R+L   E
Sbjct: 1   YKEFLMLYNRLTETCFHTCATNLNYRSLTQEE 32


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 298 CMEKYLRMNQRVSQRFHEFQMLANENMLALAQKSGNPS 411
           C+E YL   + V  RF+    L+NE++L +   + NP+
Sbjct: 776 CLEDYLETKRLVFSRFY---FLSNEDLLDILANNKNPN 810


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,860,706
Number of Sequences: 59808
Number of extensions: 279327
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)