Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o24f
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-11|AAB03140.1|   90|Caenorhabditis elegans Transport to i...    92   2e-19
AF150108-1|AAD40014.1|   90|Caenorhabditis elegans small zinc fi...    92   2e-19
U61947-12|AAO44913.1|   78|Caenorhabditis elegans Transport to i...    90   1e-18
Z73422-9|CAI46556.1|  111|Caenorhabditis elegans Hypothetical pr...    59   2e-09
AF150109-1|AAD40015.1|  111|Caenorhabditis elegans small zinc fi...    59   2e-09
Z81470-3|CAB03880.1|  401|Caenorhabditis elegans Hypothetical pr...    32   0.32 
Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc fi...    30   1.3  
Z81491-3|CAB04018.1|  194|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    27   6.8  

>U61947-11|AAB03140.1|   90|Caenorhabditis elegans Transport to
           inner mitochondrialmembrane (yeast tim) protein 9.1,
           isoform a protein.
          Length = 90

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
 Frame = +1

Query: 157 MSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVS 336
           M+    I+TF+DFL QYN ++E CFN C+++F SRT+   E+ C  NC++K+L+M QRVS
Sbjct: 1   MTSEQNIQTFRDFLTQYNLVAEQCFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVS 60

Query: 337 QRFHEFQML-ANENMLALAQKSGNPS*KV 420
           QRF E Q+L A  N  A+  ++G    K+
Sbjct: 61  QRFQEHQLLNAQANGAAIKVENGGKINKI 89


>AF150108-1|AAD40014.1|   90|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 90

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
 Frame = +1

Query: 157 MSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVS 336
           M+    I+TF+DFL QYN ++E CFN C+++F SRT+   E+ C  NC++K+L+M QRVS
Sbjct: 1   MTSEQNIQTFRDFLTQYNLVAEQCFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVS 60

Query: 337 QRFHEFQML-ANENMLALAQKSGNPS*KV 420
           QRF E Q+L A  N  A+  ++G    K+
Sbjct: 61  QRFQEHQLLNAQANGAAIKVENGGKINKI 89


>U61947-12|AAO44913.1|   78|Caenorhabditis elegans Transport to
           inner mitochondrialmembrane (yeast tim) protein 9.1,
           isoform b protein.
          Length = 78

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 36/69 (52%), Positives = 51/69 (73%)
 Frame = +1

Query: 157 MSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVS 336
           M+    I+TF+DFL QYN ++E CFN C+++F SRT+   E+ C  NC++K+L+M QRVS
Sbjct: 1   MTSEQNIQTFRDFLTQYNLVAEQCFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVS 60

Query: 337 QRFHEFQML 363
           QRF E Q+L
Sbjct: 61  QRFQEHQLL 69


>Z73422-9|CAI46556.1|  111|Caenorhabditis elegans Hypothetical
           protein B0564.1b protein.
          Length = 111

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/65 (38%), Positives = 37/65 (56%)
 Frame = +1

Query: 157 MSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVS 336
           M+ +  I+  ++FL  YN LSE CFN C  D+T+ TL   E  C   C++K + +N+R  
Sbjct: 1   MNTIQNIQQLREFLTVYNTLSERCFNACARDYTTSTLTKDEGSCVSQCIDKQMLVNRRFM 60

Query: 337 QRFHE 351
             F E
Sbjct: 61  LVFAE 65


>AF150109-1|AAD40015.1|  111|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 111

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/65 (38%), Positives = 37/65 (56%)
 Frame = +1

Query: 157 MSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVS 336
           M+ +  I+  ++FL  YN LSE CFN C  D+T+ TL   E  C   C++K + +N+R  
Sbjct: 1   MNTIQNIQQLREFLTVYNTLSERCFNACARDYTTSTLTKDEGSCVSQCIDKQMLVNRRFM 60

Query: 337 QRFHE 351
             F E
Sbjct: 61  LVFAE 65


>Z81470-3|CAB03880.1|  401|Caenorhabditis elegans Hypothetical
           protein C14A6.3 protein.
          Length = 401

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 94  LNNHTVLNFS*RYTEMATPEMMSEVDQIKTFKDFLVQYNKLSELC-FNDCIHDFTSRTLK 270
           L+N T+  F      +  PE M ++DQ +   + +++Y    EL  FND +++  S    
Sbjct: 290 LSNATIQGFYEEIIGIINPEDMKDIDQARKVAEEILKYPNYQELIQFNDVVYNKLSALYF 349

Query: 271 ST 276
           ST
Sbjct: 350 ST 351


>Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical
           protein DY3.1 protein.
          Length = 108

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 214 LSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQ 339
           +SE C N CI      +L S E +C   CM++++     VSQ
Sbjct: 41  ISEKCTNKCI-TAPGSSLASGEKQCLQRCMDRFMESWNLVSQ 81


>AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 108

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 214 LSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQ 339
           +SE C N CI      +L S E +C   CM++++     VSQ
Sbjct: 41  ISEKCTNKCI-TAPGSSLASGEKQCLQRCMDRFMESWNLVSQ 81


>Z81491-3|CAB04018.1|  194|Caenorhabditis elegans Hypothetical
           protein D1086.3 protein.
          Length = 194

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 238 CIHDFTSRTLKSTEDKCT 291
           C+ DF S T KST+D CT
Sbjct: 130 CLEDFKSETKKSTKDTCT 147


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 130 YTEMATPEMMSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTE-DKCTVNCME 306
           Y  M +  +  E D+++T  + +V+ + L +       ++  +    + E D CT N +E
Sbjct: 339 YARMISENLGKENDKMQTLTETVVESSGLEKGADEMVRNEIINTVFNAAEEDPCTSNSLE 398

Query: 307 KY 312
           KY
Sbjct: 399 KY 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,409,236
Number of Sequences: 27780
Number of extensions: 228658
Number of successful extensions: 607
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)