Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o24f
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46560.1 68416.m05054 mitochondrial import inner membrane tra...    64   6e-11
At5g50810.1 68418.m06295 mitochondrial import inner membrane tra...    39   0.003
At2g29530.1 68415.m03587 mitochondrial import inner membrane tra...    38   0.003
At1g76780.1 68414.m08935 expressed protein ; expression supporte...    28   4.8  
At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, ...    27   8.3  

>At3g46560.1 68416.m05054 mitochondrial import inner membrane
           translocase (TIM9) identical to mitochondrial import
           inner membrane translocase subunit Tim9 [Arabidopsis
           thaliana] Swiss-Prot:Q9XGX9; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 93

 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 29/72 (40%), Positives = 42/72 (58%)
 Frame = +1

Query: 151 EMMSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQR 330
           +M S +DQ++  +D L  YN L E CF DC+  FT ++L+  E+ C + C EK+L+   R
Sbjct: 19  KMASMIDQLQ-LRDSLRMYNSLVERCFVDCVDSFTRKSLQKQEETCVMRCAEKFLKHTMR 77

Query: 331 VSQRFHEFQMLA 366
           V  RF E    A
Sbjct: 78  VGMRFAELNQNA 89


>At5g50810.1 68418.m06295 mitochondrial import inner membrane
           translocase (TIM8) identical to mitochondrial import
           inner membrane translocase subunit Tim8 [Arabidopsis
           thaliana] Swiss-Prot:Q9XGY4; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 77

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +1

Query: 148 PEMMSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQ 327
           PE++  + Q K         +K++ +C++ CI         S+E  C  +C ++Y+ M+ 
Sbjct: 9   PELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSM 68

Query: 328 RVSQRFH 348
            + +RF+
Sbjct: 69  IIMKRFN 75


>At2g29530.1 68415.m03587 mitochondrial import inner membrane
           translocase (TIM10) identical to mitochondrial import
           inner membrane translocase subunit Tim10 [Arabidopsis
           thaliana] Swiss-Prot:Q9ZW33; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 83

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 205 YNKLSELCFNDCIHD-FTSRTLKSTEDKCTVNCMEKYLRMNQRVSQ 339
           +NKL++ CFN C+   +    L   E+ C   C+ KY ++N  V Q
Sbjct: 29  FNKLAQTCFNKCVDKRYKEAELNMGENSCIDRCVSKYWQVNGMVGQ 74


>At1g76780.1 68414.m08935 expressed protein ; expression supported by
            MPSS
          Length = 1871

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +1

Query: 127  RYTEMATPEMMSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCME 306
            R  E  T E +S   +I+  KD L +  K SE+  N  IH+F   +     ++   +  E
Sbjct: 1466 RGEEKGTAENVSST-KIQQTKDELEKPRKPSEISENHNIHEFMDSSQSQDIEEKGSDQAE 1524

Query: 307  KYLRMNQ 327
            KY + N+
Sbjct: 1525 KYAKQNK 1531


>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit,
           putative similar to cellulose synthase-1 [gi:9622874]
           and -2 [gi:9622876] from Zea mays
          Length = 1065

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 404 LPDFCANANMFSLASIWNSWNLCETL*FIRRYFSIQLTVHLSSV 273
           LP FC   N F +  I N  +LC  L F   Y S  L +  S V
Sbjct: 859 LPAFCLITNTFIIPEISNLASLCFMLLFASIYASAILELKWSDV 902


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,315,623
Number of Sequences: 28952
Number of extensions: 194834
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)