Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o22r
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 156 4e-39
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 150 2e-37
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 142 5e-35
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 29 0.72
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.72
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 28 1.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.1
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 156 bits (378), Expect = 4e-39
Identities = 77/145 (53%), Positives = 98/145 (67%)
Frame = -1
Query: 702 SKKLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 523
SK+ PES+LK R+ +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 522 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 343
+I L R+AR GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129
Query: 342 ATVNMLRIAEPYIAWGYPNLKSVRE 268
AT ML++ EPY+ +G PNLK+VRE
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRE 154
Score = 120 bits (288), Expect = 3e-28
Identities = 53/100 (53%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Frame = -3
Query: 298 GIPQLKEC-P*VYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 122
GIP LK +YKRGF K++ QRI ++ N+I+E L K++I+ +EDLIHEI+TVG FK
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFK 204
Query: 121 YASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKIN 5
A+NF+WPF+L++P GGWR +K H+++GGD G R++ IN
Sbjct: 205 QAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHIN 244
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 150 bits (363), Expect = 2e-37
Identities = 71/138 (51%), Positives = 93/138 (67%)
Frame = -1
Query: 681 PESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 502
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 501 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 322
AR GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 321 IAEPYIAWGYPNLKSVRE 268
+ EPY+ +G PN K+VRE
Sbjct: 136 VVEPYVTYGIPNHKTVRE 153
Score = 124 bits (298), Expect = 2e-29
Identities = 56/100 (56%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Frame = -3
Query: 298 GIPQLKEC-P*VYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 122
GIP K +YKRGF K++ QRIP++ N+I+E L K++I+ VEDLIHEI+TVG FK
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFK 203
Query: 121 YASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKIN 5
A+NFLWPFKL++P GGWR +K H+++GGD G R++ IN
Sbjct: 204 QAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHIN 243
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 142 bits (344), Expect = 5e-35
Identities = 68/138 (49%), Positives = 92/138 (66%)
Frame = -1
Query: 681 PESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 502
PE +LK R++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 501 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 322
A+N+G+ +VP E KL FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLR
Sbjct: 75 AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134
Query: 321 IAEPYIAWGYPNLKSVRE 268
I EPY+ +G PNL SVRE
Sbjct: 135 IVEPYVMYGIPNLHSVRE 152
Score = 87.4 bits (207), Expect = 2e-18
Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Frame = -3
Query: 298 GIPQLKEC-P*VYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 122
GIP L +YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG FK
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFK 202
Query: 121 YASNFLWPFKLNNPTGG-WRKKTIHYVDGGDFGNREDKIND 2
+ FLWPF L KK H+ +G G ++IN+
Sbjct: 203 EVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINE 243
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.72
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 63 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 197
LR P L L+GH + L +SP + SST +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.72
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 600 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 484
+++K+ REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 119 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVYSRTL 280
+L +F+ +D M L T+N + +L +A W TL G + F Y+ L
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNL 370
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 50 MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 145
MNGL P W + GP + R++ F E
Sbjct: 75 MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -1
Query: 501 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 382
+ N+G YY G +AFV I G+ + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 567 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 466
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,873
Number of Sequences: 5004
Number of extensions: 69542
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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