Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o22r
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 160 1e-39
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 155 5e-38
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 87 1e-17
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 32 0.57
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 2.3
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 7.0
05_01_0316 + 2476689-2477030,2477164-2477283,2477742-2477819,247... 28 9.3
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 160 bits (388), Expect = 1e-39
Identities = 77/143 (53%), Positives = 102/143 (71%)
Frame = -1
Query: 696 KLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 517
K VPESVLK R + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 516 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 337
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 336 VNMLRIAEPYIAWGYPNLKSVRE 268
+NMLR EPY+A+GYPNLKSVRE
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRE 149
Score = 134 bits (324), Expect = 7e-32
Identities = 60/100 (60%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Frame = -3
Query: 298 GIPQLKEC-P*VYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 122
G P LK +YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI TVG FK
Sbjct: 140 GYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFK 199
Query: 121 YASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKIND 2
A+NFLWPFKL P GG +KK HYV+GGD GNRED IN+
Sbjct: 200 EANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINE 239
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 155 bits (375), Expect = 5e-38
Identities = 72/139 (51%), Positives = 99/139 (71%)
Frame = -1
Query: 684 VPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 505
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 504 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 325
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 324 RIAEPYIAWGYPNLKSVRE 268
R EPY+A+GYPNLKSVRE
Sbjct: 130 RRVEPYVAYGYPNLKSVRE 148
Score = 126 bits (305), Expect = 1e-29
Identities = 60/106 (56%), Positives = 76/106 (71%), Gaps = 7/106 (6%)
Frame = -3
Query: 298 GIPQLKEC-P*VYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVEDLIHEIFT 140
G P LK +YKRG+ KL+ QRIP+T+N ++E+ L KH+IIC+EDL+HEI T
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMT 198
Query: 139 VGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKIND 2
VG FK A+NFLWPFKL P GG +KK HYV+GGD GNRE+ IN+
Sbjct: 199 VGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINE 244
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 87.4 bits (207), Expect = 1e-17
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Frame = -1
Query: 711 KEDSKKLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 532
+E +++LP V E+VLK + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 531 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 361
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 360 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 268
F++ AT+ L + EP+I +G+PNLK+V++
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKD 151
Score = 80.2 bits (189), Expect = 2e-15
Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = -3
Query: 298 GIPQLKECP*-VYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 122
G P LK +YK+G L + P+TSN ++EK L ++ IIC+EDL+HEI +VG F+
Sbjct: 142 GFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFR 201
Query: 121 YASNFLWPFKLNNPTGGWRKKTIHYVDGGD 32
ASNFL PFKL P + K + DG +
Sbjct: 202 EASNFLMPFKLKCPERRLQMKKKPFKDGAE 231
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 31.9 bits (69), Expect = 0.57
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +2
Query: 11 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFM 190
+V A +++ + + L+ + W+ G ++LEL N+E + D+VL + + M
Sbjct: 1112 IVSASSRILDGECTSSALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVM 1171
Query: 191 E---PLLNNAVGSD 223
LL+N +GSD
Sbjct: 1172 PKIYSLLSNLIGSD 1185
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 618 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 478
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 473 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 375
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
>05_01_0316 +
2476689-2477030,2477164-2477283,2477742-2477819,
2477956-2478132,2478317-2478394,2478694-2478866,
2478994-2479149,2479573-2479633,2479831-2480049
Length = 467
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 226 VYVVHSAWRIHVCILTDTL*VGVSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQ-N 402
+Y + W++H I +L VS + +SSL T H + + +K+ Q N
Sbjct: 120 IYDADNGWKVHKDISCRSLQWTVSDIALSPDQQLLAYSSLSPTV-HIVNVQSSAKESQAN 178
Query: 403 FTDLR*NLVDTTDSDDKCQFG 465
T++ L + D DD+ FG
Sbjct: 179 VTEIHDGLEFSNDDDDEYSFG 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,831,907
Number of Sequences: 37544
Number of extensions: 451688
Number of successful extensions: 1045
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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