Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o22f
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 157 4e-39
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 157 4e-39
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 155 2e-38
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 155 2e-38
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 155 2e-38
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 151 3e-37
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 90 1e-18
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 30 1.3
At3g52860.1 68416.m05825 expressed protein 30 1.3
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 29 2.4
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 29 2.4
At5g26090.1 68418.m03104 hypothetical protein 28 5.4
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 28 5.4
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 5.4
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 7.2
At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein con... 27 9.5
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 27 9.5
At1g33970.1 68414.m04212 avirulence-responsive protein, putative... 27 9.5
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 9.5
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 157 bits (382), Expect = 4e-39
Identities = 75/139 (53%), Positives = 98/139 (70%)
Frame = +2
Query: 155 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 334
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 335 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 514
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132
Query: 515 RIAEPYIAWGYPNLKSVRE 571
R EPY+ +GYPNLKSV+E
Sbjct: 133 RRVEPYVTYGYPNLKSVKE 151
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 157 bits (382), Expect = 4e-39
Identities = 75/139 (53%), Positives = 98/139 (70%)
Frame = +2
Query: 155 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 334
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 335 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 514
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 515 RIAEPYIAWGYPNLKSVRE 571
R EPY+ +GYPNLKSV+E
Sbjct: 128 RRVEPYVTYGYPNLKSVKE 146
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 155 bits (376), Expect = 2e-38
Identities = 75/146 (51%), Positives = 101/146 (69%)
Frame = +2
Query: 134 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 313
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 314 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 493
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 494 KATVNMLRIAEPYIAWGYPNLKSVRE 571
KAT+NMLR EPY+ +GYPNLKSV+E
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKE 148
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 155 bits (376), Expect = 2e-38
Identities = 75/146 (51%), Positives = 101/146 (69%)
Frame = +2
Query: 134 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 313
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 314 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 493
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 494 KATVNMLRIAEPYIAWGYPNLKSVRE 571
KAT+NMLR EPY+ +GYPNLKSV+E
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKE 148
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 155 bits (376), Expect = 2e-38
Identities = 75/146 (51%), Positives = 101/146 (69%)
Frame = +2
Query: 134 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 313
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 314 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 493
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 494 KATVNMLRIAEPYIAWGYPNLKSVRE 571
KAT+NMLR EPY+ +GYPNLKSV+E
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKE 148
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 151 bits (366), Expect = 3e-37
Identities = 74/139 (53%), Positives = 96/139 (69%)
Frame = +2
Query: 155 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 334
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 335 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 514
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 515 RIAEPYIAWGYPNLKSVRE 571
R EPY+ +G+PNLKSV+E
Sbjct: 128 RRVEPYVTYGFPNLKSVKE 146
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 89.8 bits (213), Expect = 1e-18
Identities = 48/148 (32%), Positives = 78/148 (52%)
Frame = +2
Query: 128 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 307
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 308 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVR 487
E D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122
Query: 488 LNKATVNMLRIAEPYIAWGYPNLKSVRE 571
+ L +PY+ +GYPN KSV++
Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKD 150
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +3
Query: 153 LYQSQCSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKS 323
+ + C +V G+ F++ +Y + G LL R G+ ++S RN A + K+
Sbjct: 134 IIEKDCGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKA 191
Query: 324 D*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKF 440
PD+ + + PG+P WH+ ++ H S KF
Sbjct: 192 AKPDEPSWESPWG-PGRPGWHIECSAM---SVHYLSPKF 226
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 212 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 322
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 333 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 455
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 341 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 380
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 333 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 455
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 554 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 593
>At5g26090.1 68418.m03104 hypothetical protein
Length = 401
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 470 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVREYTN 580
+ +F+R + + ++ EP+ AW LK++RE TN
Sbjct: 337 HNIFLRFLEFVRPVDKLVEPWKAWSPRQLKALRERTN 373
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
contains Pfam domain PF01851: Proteasome/cyclosome repeat
Length = 1103
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -2
Query: 525 SAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMT 388
S R FT++ F+R N+ + I+R+ C TL + ++W+ +I+ +
Sbjct: 1059 SVPRKWFTISPFKRKNSFIAIYRNF-LCTTLISHSKSWISFQIQFS 1103
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 361 RSRGSQIGICHPNPWYQPSFTEG 429
+ +G +IGI H W++P EG
Sbjct: 263 KCKGGKIGIAHSPAWFEPEDVEG 285
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +3
Query: 273 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 425
G + T R+ +R + SD K+ V+ T GK HLS E VS F R
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRR 454
>At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
thaliana]
Length = 533
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 352 QLLRSRGSQIGICHPNPWYQPSFTEGP*SSATV 450
Q + +G +IGI H W++P + S AT+
Sbjct: 268 QCEKCKGGKIGIAHSPAWFEPHDFKDEQSGATI 300
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 128 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 307
+ED +++ + +LK L+ L RRSS K E FK E+ ++E R++
Sbjct: 324 REDIRRVKNDWDLLLKRLEKEKTELQVQLETELDRRSSEWTSKVESFKVEEKRLRE-RVR 382
Query: 308 ERDEIRLARQ 337
E E ++ Q
Sbjct: 383 ELAEHNVSLQ 392
>At1g33970.1 68414.m04212 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 342
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 227 KRRSSAIKKKREIFKRAEQYVKEYRIK 307
KR S IKK RE +RAE+ KE + K
Sbjct: 309 KRSSDEIKKLRENLERAEKETKELQKK 335
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 423 GETWLIPRIRMTNANLASPGT 361
G TW+ P I +N ++ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,028,599
Number of Sequences: 28952
Number of extensions: 227662
Number of successful extensions: 550
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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