Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o19r
         (758 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O26651 Cluster: DNA helicase II related protein; n=1; M...    33   5.8  
UniRef50_Q54S19 Cluster: PHD Zn finger-containing protein; n=1; ...    33   7.7  

>UniRef50_O26651 Cluster: DNA helicase II related protein; n=1;
           Methanothermobacter thermautotrophicus str. Delta H|Rep:
           DNA helicase II related protein - Methanobacterium
           thermoautotrophicum
          Length = 853

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -1

Query: 329 YRLLLQVEYLLVSNNLNQEFFFYFMRVRETYRICNGSLNNNLKR 198
           +  L +  + L+ + L+ + FF+ MRVRET+    G + NNL+R
Sbjct: 596 FEALAEFNFNLIMSGLSSDEFFFDMRVRETF----GGVKNNLER 635


>UniRef50_Q54S19 Cluster: PHD Zn finger-containing protein; n=1;
            Dictyostelium discoideum AX4|Rep: PHD Zn
            finger-containing protein - Dictyostelium discoideum AX4
          Length = 1361

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -1

Query: 320  LLQVEYLLVSNNLNQEFFFYFMRVRETYRICNGSLNNNLKRNHGTVVLIIR-THVSRWLV 144
            L+ V+  +V+N    +     M+++ T    N + NN++  NH T++L+I+    S+WLV
Sbjct: 1081 LVVVDNKMVNNQTINKEINNLMQLQPTTN--NNNNNNDINNNHDTLLLVIKDVEFSKWLV 1138

Query: 143  AFK 135
            + K
Sbjct: 1139 SQK 1141


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,015,977
Number of Sequences: 1657284
Number of extensions: 12322995
Number of successful extensions: 23939
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23930
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)